1QZ6

Structure of rabbit actin in complex with jaspisamide A


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1Batch7293Crystals were grown by small-scale batch by mixing equal volumes of the complex (10 mg/ml protein) and 100 mM bis-tris propane, 15% (w/v) dimethyl polyethylene glycol 5000, 25 mM CaCl2, 1 mM sodium azide, 1 mM TCEP, pH 7.0, Batch, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.4449.57

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 40.37α = 90
b = 75.958β = 99.07
c = 67.494γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42002-12-09MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-BM0.979APS19-BM

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.63099.10.044374.5524925249213.5
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.61.66100.3035.25094

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.6205025649794267299.080.166890.166890.165290.19651RANDOM16.884
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.20.370.08-0.16
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg5.603
r_scangle_it4.711
r_scbond_it2.921
r_mcangle_it1.9
r_angle_refined_deg1.682
r_angle_other_deg1.483
r_mcbond_it1.007
r_symmetry_hbond_refined0.437
r_symmetry_vdw_other0.412
r_nbd_other0.243
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg5.603
r_scangle_it4.711
r_scbond_it2.921
r_mcangle_it1.9
r_angle_refined_deg1.682
r_angle_other_deg1.483
r_mcbond_it1.007
r_symmetry_hbond_refined0.437
r_symmetry_vdw_other0.412
r_nbd_other0.243
r_symmetry_vdw_refined0.237
r_nbd_refined0.217
r_xyhbond_nbd_refined0.161
r_chiral_restr0.098
r_nbtor_other0.085
r_bond_refined_d0.016
r_gen_planes_refined0.01
r_gen_planes_other0.009
r_bond_other_d0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2820
Nucleic Acid Atoms
Solvent Atoms274
Heterogen Atoms116

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
SCALEPACKdata scaling
MOLREPphasing