X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4HANGING DROPS 12UL CAM 12MG/ML + 8UL PRECIPITANT, SEEDED 10MM NAOAC, PH 4.0, 30% MPD, 15% ISOPROPANOL
Crystal Properties
Matthews coefficientSolvent content
2.2946.4

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 59.696α = 93.22
b = 53.073β = 96.86
c = 24.572γ = 89.19
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray125CCDADSC CCDCOLLIMATOR1995-12-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RU200

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.917.4677.80.0328.61.1421890
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.91.9567.40.411.891.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1CLM1.9151765594479.20.2080.2060.259RANDOM26.39
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.431.280.420.330.57-0.63
RMS Deviations
KeyRefinement Restraint Deviation
r_scangle_it8.634
r_scbond_it6.029
r_mcangle_it4.057
r_mcbond_it2.608
r_angle_refined_deg1.832
r_angle_other_deg0.996
r_symmetry_vdw_other0.318
r_nbd_other0.249
r_symmetry_hbond_refined0.22
r_nbd_refined0.219
RMS Deviations
KeyRefinement Restraint Deviation
r_scangle_it8.634
r_scbond_it6.029
r_mcangle_it4.057
r_mcbond_it2.608
r_angle_refined_deg1.832
r_angle_other_deg0.996
r_symmetry_vdw_other0.318
r_nbd_other0.249
r_symmetry_hbond_refined0.22
r_nbd_refined0.219
r_metal_ion_refined0.207
r_symmetry_vdw_refined0.201
r_xyhbond_nbd_refined0.184
r_nbtor_other0.097
r_bond_refined_d0.022
r_gen_planes_refined0.007
r_bond_other_d0.003
r_gen_planes_other0.002
r_dihedral_angle_1_deg
r_dihedral_angle_2_deg
r_dihedral_angle_3_deg
r_dihedral_angle_4_deg
r_chiral_restr
r_nbtor_refined
r_xyhbond_nbd_other
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2316
Nucleic Acid Atoms
Solvent Atoms231
Heterogen Atoms8

Software

Software
Software NamePurpose
REFMACrefinement
ADSCdata reduction
ADSCdata scaling
EPMRphasing