4B2Q
Model of the yeast F1Fo-ATP synthase dimer based on subtomogram average
ELECTRON MICROSCOPY
| Sample |
|---|
| ATP SYNTHASE DIMER FROM MITOCHONDRIA OF SACCHAROMYCES CEREVISIAE |
| Specimen Preparation | |
|---|---|
| Sample Aggregation State | CELL |
| Vitrification Instrument | HOMEMADE PLUNGER |
| Cryogen Name | ETHANE |
| Sample Vitrification Details | VITRIFICATION 1 -- CRYOGEN- ETHANE, TEMPERATURE- 100, INSTRUMENT- HOMEMADE PLUNGER, METHOD- SINGLE SIDE MANUAL BLOTTING FOR 5 SECONDS., |
| 3D Reconstruction | |
|---|---|
| Reconstruction Method | TOMOGRAPHY |
| Number of Particles | 121 |
| Reported Resolution (Å) | 37 |
| Resolution Method | |
| Other Details | MODEL BASED ON PDBS 2WPD,2CLY AND 2BO5. SUBMISSION BASED ON EXPERIMENTAL DATA FROM EMDB EMD-2161. (DEPOSITION ID: 10941). |
| Refinement Type | |
| Symmetry Type | POINT |
| Point Symmetry | C2 |
| Map-Model Fitting and Refinement | |||||
|---|---|---|---|---|---|
| Id | 1 (2WPD) | ||||
| Refinement Space | REAL | ||||
| Refinement Protocol | RIGID BODY FIT | ||||
| Refinement Target | |||||
| Overall B Value | |||||
| Fitting Procedure | |||||
| Details | METHOD--RIGID BODY REFINEMENT PROTOCOL--X-RAY | ||||
| Data Acquisition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Detector Type | GATAN ULTRASCAN 1000 (2k x 2k) | ||||||||
| Electron Dose (electrons/Å**2) | 160 | ||||||||
| Imaging Experiment | 1 |
|---|---|
| Date of Experiment | 2009-03-11 |
| Temperature (Kelvin) | 80 |
| Microscope Model | FEI POLARA 300 |
| Minimum Defocus (nm) | 6500 |
| Maximum Defocus (nm) | 7500 |
| Minimum Tilt Angle (degrees) | -50 |
| Maximum Tilt Angle (degrees) | 60 |
| Nominal CS | 2 |
| Imaging Mode | BRIGHT FIELD |
| Specimen Holder Model | |
| Nominal Magnification | 41000 |
| Calibrated Magnification | 24500 |
| Source | FIELD EMISSION GUN |
| Acceleration Voltage (kV) | 300 |
| Imaging Details |
| EM Software | ||
|---|---|---|
| Task | Software Package | Version |
| MODEL FITTING | UCSF Chimera | |
| RECONSTRUCTION | IMOD | |
