5I6N

Crystal Structure of Copper Nitrite Reductase at 100K after 11.73 MGy


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4.52981.7 M Ammonium Sulphate, 0.1 M Sodium Acetate pH 4.5
Crystal Properties
Matthew coefficientSolvent content
1.9938.2

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 95.192α = 90
b = 95.192β = 90
c = 95.192γ = 90
Symmetry
Space GroupP 21 3

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 6MMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I040.97DiamondI04

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.242.5797.50.040.0450.0210.99916.74.186878
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.21.2299.71.2611.4550.710.4853.94420

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT1.2242.678412414896.730.1320.13030.1652RANDOM17.719
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.095
r_sphericity_free22.436
r_dihedral_angle_4_deg17.1
r_dihedral_angle_3_deg13.015
r_sphericity_bonded8.426
r_dihedral_angle_1_deg7.67
r_rigid_bond_restr2.66
r_mcangle_it1.796
r_angle_refined_deg1.677
r_mcbond_it1.459
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.095
r_sphericity_free22.436
r_dihedral_angle_4_deg17.1
r_dihedral_angle_3_deg13.015
r_sphericity_bonded8.426
r_dihedral_angle_1_deg7.67
r_rigid_bond_restr2.66
r_mcangle_it1.796
r_angle_refined_deg1.677
r_mcbond_it1.459
r_mcbond_other1.44
r_angle_other_deg0.994
r_chiral_restr0.11
r_bond_refined_d0.014
r_gen_planes_refined0.008
r_gen_planes_other0.003
r_bond_other_d0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2566
Nucleic Acid Atoms
Solvent Atoms262
Heterogen Atoms22

Software

Software
Software NamePurpose
REFMACrefinement
Aimlessdata scaling
PDB_EXTRACTdata extraction
XDSdata reduction
REFMACphasing