5L9J

Room temperature X-ray diffraction of tetragonal HEWL. First data set (0.31 MGy)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4.7291Protein: 40-80 mg/ml of protein in 200mM NaAcetate pH 4.7 Crystallization condition: 200mM NaAcetate pH 4.7, 10% NaCl
Crystal Properties
Matthews coefficientSolvent content
2.3247

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 79.244α = 90
b = 79.244β = 90
c = 37.896γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray298PIXELDECTRIS PILATUS 6Mkb mirrors2015-12-11MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALBA BEAMLINE XALOC0.979268ALBAXALOC

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.539.6299.70.0630.99419.35.81982513.765
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.51.5398.60.2176.34.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISTHROUGHOUT1BWH1.5201855693097.950.113410.110990.16196RANDOM21.94
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.1-0.10.2
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free38.27
r_dihedral_angle_2_deg35.754
r_dihedral_angle_4_deg21.725
r_dihedral_angle_3_deg14.094
r_sphericity_bonded13.933
r_scangle_other6.714
r_dihedral_angle_1_deg6.081
r_scbond_it6.034
r_scbond_other6.028
r_long_range_B_refined5.634
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free38.27
r_dihedral_angle_2_deg35.754
r_dihedral_angle_4_deg21.725
r_dihedral_angle_3_deg14.094
r_sphericity_bonded13.933
r_scangle_other6.714
r_dihedral_angle_1_deg6.081
r_scbond_it6.034
r_scbond_other6.028
r_long_range_B_refined5.634
r_long_range_B_other5.469
r_rigid_bond_restr5.289
r_mcangle_other3.033
r_mcangle_it3.011
r_mcbond_it2.529
r_mcbond_other2.432
r_angle_refined_deg2.317
r_angle_other_deg1.269
r_chiral_restr0.163
r_bond_refined_d0.028
r_gen_planes_refined0.013
r_bond_other_d0.002
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1001
Nucleic Acid Atoms
Solvent Atoms86
Heterogen Atoms7

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling