6HVI

Human PFKFB3 in complex with a N-Aryl 6-Aminoquinoxaline inhibitor 2


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP7.52770.16M Monosaccharides, 30% GOL_P4K, 0.1M MOPS/Hepes pH 7.5
Crystal Properties
Matthews coefficientSolvent content
3.8868.32

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 103.036α = 90
b = 103.036β = 90
c = 255.012γ = 120
Symmetry
Space GroupP 65 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2015-05-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONBESSY BEAMLINE 14.10.91841BESSY14.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.9647.7799.90.1030.1070.99922.0412.9815835334.011
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.962.0899.61.0051.0470.7962.7312.589

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.9647.7756018233599.930.18720.18630.2084RANDOM31.937
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.010.01-0.03
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.676
r_dihedral_angle_4_deg15.45
r_dihedral_angle_3_deg14.079
r_dihedral_angle_1_deg5.92
r_angle_refined_deg1.587
r_angle_other_deg0.752
r_chiral_restr0.095
r_bond_refined_d0.014
r_gen_planes_refined0.014
r_gen_planes_other0.012
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.676
r_dihedral_angle_4_deg15.45
r_dihedral_angle_3_deg14.079
r_dihedral_angle_1_deg5.92
r_angle_refined_deg1.587
r_angle_other_deg0.752
r_chiral_restr0.095
r_bond_refined_d0.014
r_gen_planes_refined0.014
r_gen_planes_other0.012
r_bond_other_d0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3536
Nucleic Acid Atoms
Solvent Atoms373
Heterogen Atoms72

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing
PDB_EXTRACTdata extraction