6J1C

Photoswitchable fluorescent protein Gamillus, N150C/T204V double mutant, off-state


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP5298Ammonium phosphate, sodium citrate, sodium chloride, HEPES, pH5.0
Crystal Properties
Matthew coefficientSolvent content
5.8378.89

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 162.021α = 90
b = 162.021β = 90
c = 162.021γ = 90
Symmetry
Space GroupI 21 3

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATERIGAKU RAXIS IV++2018-12-17MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU FR-E+ SUPERBRIGHT1.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.0946.77299.90.0710.0760.99919.447.344159437.341
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.092.2299.80.5110.5510.9093.547.271

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT5Y002.0946.7739511208099.950.1620.16130.1769RANDOM31.497
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.52
r_dihedral_angle_4_deg15.411
r_dihedral_angle_3_deg13.54
r_dihedral_angle_1_deg7.853
r_angle_refined_deg2.253
r_angle_other_deg1.582
r_chiral_restr0.102
r_bond_refined_d0.02
r_gen_planes_refined0.015
r_gen_planes_other0.007
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.52
r_dihedral_angle_4_deg15.411
r_dihedral_angle_3_deg13.54
r_dihedral_angle_1_deg7.853
r_angle_refined_deg2.253
r_angle_other_deg1.582
r_chiral_restr0.102
r_bond_refined_d0.02
r_gen_planes_refined0.015
r_gen_planes_other0.007
r_bond_other_d0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1811
Nucleic Acid Atoms
Solvent Atoms165
Heterogen Atoms479

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
PDB_EXTRACTdata extraction
MOLREPphasing