X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.5277MPEG 5000, ammonium sulphate, sodium cacodylate
Crystal Properties
Matthews coefficientSolvent content
2.2444.98

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 60.69α = 90
b = 67.22β = 90
c = 67.58γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDRAYONIX MX300-HS2019-02-21MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 22-BM1.00APS22-BM

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.837.5192.360.0950.0420.99710.64.6230341.520.1
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.81.84796.120.8350.3710.8724.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.837.5123034122992.360.178450.176320.21773RANDOM22.372
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
3.03-1.6-1.43
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.615
r_dihedral_angle_4_deg19.536
r_dihedral_angle_3_deg18.875
r_long_range_B_other9.408
r_long_range_B_refined9.404
r_dihedral_angle_1_deg5.528
r_angle_refined_deg1.691
r_scangle_other1.503
r_angle_other_deg1.498
r_mcangle_it1.138
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.615
r_dihedral_angle_4_deg19.536
r_dihedral_angle_3_deg18.875
r_long_range_B_other9.408
r_long_range_B_refined9.404
r_dihedral_angle_1_deg5.528
r_angle_refined_deg1.691
r_scangle_other1.503
r_angle_other_deg1.498
r_mcangle_it1.138
r_mcangle_other1.138
r_scbond_it1.02
r_scbond_other1.005
r_mcbond_it0.705
r_mcbond_other0.702
r_chiral_restr0.081
r_bond_refined_d0.011
r_gen_planes_refined0.009
r_gen_planes_other0.005
r_bond_other_d0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2149
Nucleic Acid Atoms
Solvent Atoms141
Heterogen Atoms152

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
Aimlessdata scaling
PHASERphasing