7B6G

Crystal structure of MurE from E.coli in complex with Z1675346324


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP5.52940.1M citrate pH 5.5 23% PEG4K 16% 2-propanol
Crystal Properties
Matthews coefficientSolvent content
2.2545.27

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 58.276α = 97.234
b = 58.293β = 91.447
c = 74.115γ = 105.313
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 S 6M2018-07-13MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I04-10.91587DiamondI04-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.9473.42960.0870.99681.766302
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.941.990.6721.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT7B531.93773.38866274339395.5960.2070.20490.255739.35
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.0641.7290.3610.1371.354-1.594
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.117
r_dihedral_angle_4_deg15.922
r_dihedral_angle_3_deg14.569
r_lrange_it6.994
r_lrange_other6.98
r_dihedral_angle_1_deg6.612
r_scangle_other5.373
r_scangle_it5.373
r_mcangle_it4.122
r_mcangle_other4.122
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.117
r_dihedral_angle_4_deg15.922
r_dihedral_angle_3_deg14.569
r_lrange_it6.994
r_lrange_other6.98
r_dihedral_angle_1_deg6.612
r_scangle_other5.373
r_scangle_it5.373
r_mcangle_it4.122
r_mcangle_other4.122
r_scbond_other3.537
r_scbond_it3.537
r_mcbond_it2.939
r_mcbond_other2.938
r_angle_refined_deg1.486
r_angle_other_deg1.275
r_symmetry_xyhbond_nbd_refined0.279
r_nbd_refined0.207
r_nbd_other0.203
r_symmetry_nbd_refined0.197
r_symmetry_nbd_other0.174
r_xyhbond_nbd_refined0.153
r_nbtor_refined0.151
r_symmetry_nbtor_other0.076
r_chiral_restr0.065
r_symmetry_xyhbond_nbd_other0.025
r_bond_refined_d0.008
r_gen_planes_refined0.006
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7251
Nucleic Acid Atoms
Solvent Atoms266
Heterogen Atoms23

Software

Software
Software NamePurpose
REFMACrefinement
xia2data reduction
xia2data scaling
PHASERphasing