5UG6

Perforin C2 Domain - T431D


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.222 
  • R-Value Work: 0.191 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Perforin proteostasis is regulated through its C2 domain: supra-physiological cell death mediated by T431D-perforin.

Brennan, A.J.Law, R.H.P.Conroy, P.J.Noori, T.Lukoyanova, N.Saibil, H.Yagita, H.Ciccone, A.Verschoor, S.Whisstock, J.C.Trapani, J.A.Voskoboinik, I.

(2018) Cell Death Differ. 25: 1517-1529


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Perforin-1
A
149Mus musculusMutation(s): 5 
Gene Names: Prf1 (Pfp)
Find proteins for P10820 (Mus musculus)
Go to UniProtKB:  P10820
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
IOD
Query on IOD

Download SDF File 
Download CCD File 
A
IODIDE ION
I
XMBWDFGMSWQBCA-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.222 
  • R-Value Work: 0.191 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 27.774α = 90.00
b = 66.027β = 90.00
c = 74.867γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
XDSdata reduction
BUSTERrefinement
SCALAdata scaling
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-02-07
    Type: Initial release
  • Version 1.1: 2018-02-21
    Type: Database references
  • Version 1.2: 2018-04-18
    Type: Data collection
  • Version 1.3: 2018-09-12
    Type: Data collection, Database references