6JFS

K4U bound crystal structure of class II peptide deformylase from methicillin resistant Staphylococcus aureus


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.268 
  • R-Value Work: 0.209 
  • R-Value Observed: 0.212 

wwPDB Validation 3D Report Full Report



Literature

K4U bound crystal structure of class II peptide deformylase from methicillin resistant Staphylococcus aureus

Lee, I.H.Ho, T.H.Kang, L.W.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Peptide deformylaseA183Staphylococcus aureusMutation(s): 0 
Gene Names: defdef1pdf1
EC: 3.5.1.88
Find proteins for P68826 (Staphylococcus aureus)
Explore P68826 
Go to UniProtKB:  P68826
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
LHY
Query on LHY

Download CCD File 
A
L-[(N-HYDROXYAMINO)CARBONYL]PHENYLALANINE
C10 H12 N2 O4
IOFPEOPOAMOMBE-QMMMGPOBSA-N
 Ligand Interaction
NI
Query on NI

Download CCD File 
A
NICKEL (II) ION
Ni
VEQPNABPJHWNSG-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.268 
  • R-Value Work: 0.209 
  • R-Value Observed: 0.212 
  • Space Group: C 2 2 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 95.76α = 90
b = 120.396β = 90
c = 47.208γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
HKL-2000data scaling
HKL-2000data collection
HKL-2000data reduction
MOLREPphasing

Structure Validation

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Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2020-02-12
    Type: Initial release