Macromolecule Content

Total Structure Weight: 114.38 kDa
Atom Count: 7557
Residue Count: 960
Unique protein chains: 1

6TRY

Crystal structure of human Aldehyde dehydrogenase 1A3 in complex with MF13 inhibitor compound

DOI: 10.2210/pdb6TRY/pdb

Classification: OXIDOREDUCTASE
Organism(s): Homo sapiens
Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
Mutation(s): No

Deposited: 2019-12-19 Released: 2021-01-13
Deposition Author(s): Edoardo, L.M.G., Silvia, G.
Funding Organization(s): Italian Ministry of Education

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.90 Å
R-Value Free: 0.273
R-Value Work: 0.191
R-Value Observed: 0.195

wwPDB Validation 3D Report Full Report

Literature

Crystal structure of human Aldehyde dehydrogenase 1A3 in complex with MF13 inhibitor compound

Edoardo, L.M.G., Silvia, G.

To be published.

Macromolecules

Find similar proteins by:

(by identity cutoff) | Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Aldehyde dehydrogenase family 1 member A3	A, B	512	Homo sapiens	Mutation(s): 0 Gene Names: ALDH1A3, ALDH6 EC: 1.2.1.36
Find proteins for P47895 (Homo sapiens) Explore P47895 Go to UniProtKB: P47895
NIH Common Fund Data Resources
PHAROS P47895 GTEx ENSG00000184254
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
NAD Query on NAD Download Ideal Coordinates CCD File SDF format, chain C [A] SDF format, chain F [B] MOL2 format, chain C [A] MOL2 format, chain F [B]	A, B	NICOTINAMIDE-ADENINE-DINUCLEOTIDE C₂₁ H₂₇ N₇ O₁₄ P₂ BAWFJGJZGIEFAR-NNYOXOHSSA-N		Ligand Interaction
NW8 Query on NW8 Download Ideal Coordinates CCD File SDF format, chain D [A] SDF format, chain G [B] MOL2 format, chain D [A] MOL2 format, chain G [B]	A, B	8-(4-chlorophenyl)-2-phenyl-imidazo[1,2-a]pyridine C₁₉ H₁₃ Cl N₂ PWFFYDSSTMPMCL-UHFFFAOYSA-N		Ligand Interaction
GOL Query on GOL Download Ideal Coordinates CCD File SDF format, chain E [A] MOL2 format, chain E [A]	A	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.90 Å
R-Value Free: 0.273
R-Value Work: 0.191
R-Value Observed: 0.195
Space Group: P 2₁ 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 81.296	α = 90
b = 89.176	β = 90
c = 159.236	γ = 90

Software Package:

Software Name	Purpose
SCALA	data scaling
PHENIX	refinement
PDB_EXTRACT	data extraction
XDS	data reduction
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Deposited Date: 2019-12-19
Released Date: 2021-01-13

Deposition Author(s):

Edoardo, L.M.G.

Funding Organization	Location	Grant Number
Italian Ministry of Education	Italy	--

Revision History

Version 1.0: 2021-01-13
Type: Initial release

RCSB PDB is funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.