6TTK

Crystal structure of the kelch domain of human KLHL12 in complex with DVL1 peptide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.383 Å
  • R-Value Free: 0.251 
  • R-Value Work: 0.225 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of the kelch domain of human KLHL12 in complex with DVL1 peptide

Chen, Z.Williams, E.Pike, A.C.W.Strain-Damerell, C.Wang, D.Chalk, R.Burgess-Brown, N.Krojer, T.von Delft, F.Arrowsmith, C.H.Edwards, A.M.Bountra, C.Bullock, A.N.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Kelch-like protein 12
A, B, C, D
301Homo sapiensMutation(s): 0 
Gene Names: KLHL12 (C3IP1)
Find proteins for Q53G59 (Homo sapiens)
Go to Gene View: KLHL12
Go to UniProtKB:  Q53G59
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
DVL1
F, G, H, E
15N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NA
Query on NA

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Download CCD File 
A, B, C
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
CL
Query on CL

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Download CCD File 
D
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
EDO
Query on EDO

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Download CCD File 
A
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.383 Å
  • R-Value Free: 0.251 
  • R-Value Work: 0.225 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 80.225α = 90.00
b = 73.145β = 94.50
c = 101.845γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
PHASERphasing
xia2data reduction
Aimlessdata scaling
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2020-02-12
    Type: Initial release