7JMN

Tail module of Mediator complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.58 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Mediator structure and conformation change.

Zhang, H.Chen, D.H.Mattoo, R.U.H.Bushnell, D.A.Wang, Y.Yuan, C.Wang, L.Wang, C.Davis, R.E.Nie, Y.Kornberg, R.D.

(2021) Mol Cell 81: 1781-1788.e4

  • DOI: https://doi.org/10.1016/j.molcel.2021.01.022
  • Primary Citation of Related Structures:  
    6XP5, 7JMN

  • PubMed Abstract: 

    Mediator is a universal adaptor for transcription control. It serves as an interface between gene-specific activator or repressor proteins and the general RNA polymerase II (pol II) transcription machinery. Previous structural studies revealed a relatively small part of Mediator and none of the gene activator-binding regions. We have determined the cryo-EM structure of the Mediator at near-atomic resolution. The structure reveals almost all amino acid residues in ordered regions, including the major targets of activator proteins, the Tail module, and the Med1 subunit of the Middle module. Comparison of Mediator structures with and without pol II reveals conformational changes that propagate across the entire Mediator, from Head to Tail, coupling activator- and pol II-interacting regions.


  • Organizational Affiliation

    Shanghai Institute for Advanced Immunochemical Studies, ShanghaiTech University, 201210 Shanghai, China; Department of Structural Biology, Stanford University School of Medicine, Stanford, CA 94305, USA.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 5A [auth E]1,099Thermochaetoides thermophila DSM 1495Mutation(s): 0 
Gene Names: MED5CTHT_0065900
UniProt
Find proteins for G0SGD2 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
Explore G0SGD2 
Go to UniProtKB:  G0SGD2
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UniProt GroupG0SGD2
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 14B [auth N]1,168Thermochaetoides thermophila DSM 1495Mutation(s): 0 
Gene Names: CTHT_0057660
UniProt
Find proteins for G0SCL5 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
Explore G0SCL5 
Go to UniProtKB:  G0SCL5
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UniProt GroupG0SCL5
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Mediator of RNA polymerase II transcription subunit 16C [auth P]1,130Thermochaetoides thermophila DSM 1495Mutation(s): 0 
Gene Names: MED16CTHT_0059860
UniProt
Find proteins for G0SEV7 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
Explore G0SEV7 
Go to UniProtKB:  G0SEV7
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UniProt GroupG0SEV7
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
MED15D [auth O]1,625Thermochaetoides thermophila DSM 1495Mutation(s): 0 
Gene Names: CTHT_0070460
UniProt
Find proteins for G0SHL5 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
Explore G0SHL5 
Go to UniProtKB:  G0SHL5
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UniProt GroupG0SHL5
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Unknown peptideE [auth X]52Thermochaetoides thermophila DSM 1495Mutation(s): 0 
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.58 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2021-03-03
    Type: Initial release
  • Version 1.1: 2021-04-28
    Changes: Database references
  • Version 1.2: 2024-03-06
    Changes: Data collection, Database references