1F30

THE STRUCTURAL BASIS FOR DNA PROTECTION BY E. COLI DPS PROTEIN

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1f30a_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	Dodecameric ferritin homolog	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
B	d1f30b_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	Dodecameric ferritin homolog	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
C	d1f30c_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	Dodecameric ferritin homolog	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
D	d1f30d_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	Dodecameric ferritin homolog	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
E	d1f30e_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	Dodecameric ferritin homolog	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
H	d1f30h_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	Dodecameric ferritin homolog	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
I	d1f30i_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	Dodecameric ferritin homolog	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
J	d1f30j_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	Dodecameric ferritin homolog	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
K	d1f30k_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	Dodecameric ferritin homolog	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
F	d1f30f_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	Dodecameric ferritin homolog	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
G	d1f30g_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	Dodecameric ferritin homolog	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
L	d1f30l_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	Dodecameric ferritin homolog	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Ferritin-like	8036995	3001658	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Ferritin-like	8036995	3001658	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Ferritin-like	8036995	3001658	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Ferritin-like	8036995	3001658	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Ferritin-like	8036995	3001658	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Ferritin-like	8036995	3001658	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Ferritin-like	8036995	3001658	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Ferritin-like	8036995	3001658	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Ferritin-like	8036995	3001658	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Ferritin-like	8036995	3001658	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Ferritin-like	8036995	3001658	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Ferritin-like	8036995	3001658	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Ferritin_1	e1f30A1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin_1	ECOD (1.6)
B	Ferritin_1	e1f30B1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin_1	ECOD (1.6)
C	Ferritin_1	e1f30C1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin_1	ECOD (1.6)
D	Ferritin_1	e1f30D1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin_1	ECOD (1.6)
E	Ferritin_1	e1f30E1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin_1	ECOD (1.6)
H	Ferritin_1	e1f30H1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin_1	ECOD (1.6)
I	Ferritin_1	e1f30I1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin_1	ECOD (1.6)
J	Ferritin_1	e1f30J1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin_1	ECOD (1.6)
K	Ferritin_1	e1f30K1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin_1	ECOD (1.6)
F	Ferritin_1	e1f30F1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin_1	ECOD (1.6)
G	Ferritin_1	e1f30G1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin_1	ECOD (1.6)
L	Ferritin_1	e1f30L1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Ferritin/Heme oxygenase	T: Ferritin	F: Ferritin_1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
B	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
C	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
D	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
E	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
H	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
I	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
J	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
K	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
F	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
G	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
L	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF00210	Ferritin-like domain (Ferritin)	Ferritin-like domain	This family contains ferritins and other ferritin-like proteins such as members of the DPS family and bacterioferritins.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	DNA PROTECTION DURING STARVATION PROTEIN	DNA binding binding organic cyclic compound binding nucleic acid binding oxidoreductase activity, acting on metal ions oxidoreductase activity catalytic activity cation binding ferric iron binding transition metal ion binding iron ion binding ion binding metal ion binding small molecule binding DNA binding binding organic cyclic compound binding nucleic acid binding oxidoreductase activity, acting on metal ions oxidoreductase activity catalytic activity cation binding ferric iron binding transition metal ion binding iron ion binding ion binding metal ion binding small molecule binding identical protein binding protein binding	intracellular iron ion homeostasis inorganic ion homeostasis cellular homeostasis chemical homeostasis homeostatic process intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis regulation of DNA-templated DNA replication initiation negative regulation of biological process negative regulation of DNA-templated DNA replication initiation regulation of primary metabolic process intracellular iron ion homeostasis inorganic ion homeostasis cellular homeostasis chemical homeostasis homeostatic process intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis regulation of DNA-templated DNA replication initiation negative regulation of biological process negative regulation of DNA-templated DNA replication initiation regulation of primary metabolic process nucleobase-containing compound metabolic process negative regulation of DNA-templated DNA replication negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process negative regulation of macromolecule metabolic process DNA-templated DNA replication regulation of biological process negative regulation of DNA replication DNA replication initiation negative regulation of metabolic process biological regulation primary metabolic process DNA metabolic process regulation of macromolecule metabolic process nucleic acid metabolic process DNA replication regulation of DNA-templated DNA replication metabolic process negative regulation of DNA metabolic process macromolecule metabolic process regulation of metabolic process regulation of DNA replication regulation of DNA metabolic process cellular component organization organelle organization chromosome condensation chromosome organization cellular process cellular component organization or biogenesis response to stimulus response to stress response to nutrient levels response to starvation	membrane cellular anatomical entity protein-containing complex intracellular anatomical structure DnaA-Dps complex protein-DNA complex chromosome replication inhibiting complex intracellular organelle organelle intracellular non-membrane-bounded organelle replication fork replisome non-membrane-bounded organelle membrane cellular anatomical entity protein-containing complex intracellular anatomical structure DnaA-Dps complex protein-DNA complex chromosome replication inhibiting complex intracellular organelle organelle intracellular non-membrane-bounded organelle replication fork replisome non-membrane-bounded organelle nucleoid cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR002177	DNA-binding protein Dps	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR012347	Ferritin-like	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR009078	Ferritin-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR023067	DNA protection during starvation protein, gammaproteobacteria	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR023188	DNA-binding protein Dps, conserved site	Conserved Site
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR008331	Ferritin/DPS protein domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.