1IWG
Crystal structure of Bacterial Multidrug Efflux transporter AcrB
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- AMR Gene: CARD Annotation
- AMR Gene Family: CARD Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1iwga1 | Alpha and beta proteins (a+b) | Ferredoxin-like | Multidrug efflux transporter AcrB pore domain | PN1, PN2, PC1 and PC2 subdomains | Multidrug efflux transporter AcrB pore domain | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
A | d1iwga5 | Alpha and beta proteins (a+b) | Multidrug efflux transporter AcrB TolC docking domain | DN and DC subdomains | Multidrug efflux transporter AcrB TolC docking domain | DN and DC subdomains | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
A | d1iwga7 | Membrane and cell surface proteins and peptides | Multidrug efflux transporter AcrB transmembrane domain | Multidrug efflux transporter AcrB transmembrane domain | Multidrug efflux transporter AcrB transmembrane domain | Multidrug efflux transporter AcrB transmembrane domain | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Multidrug efflux transporter AcrB pore domain (PN1, PN2, PC1 and PC2 subdomains) | 8030144 | 4003253 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Multidrug efflux transporter AcrB pore domain (PN1, PN2, PC1 and PC2 subdomains) | 8030146 | 4003253 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Multidrug efflux transporter AcrB pore domain (PN1, PN2, PC1 and PC2 subdomains) | 8030149 | 4003253 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Multidrug efflux transporter AcrB pore domain (PN1, PN2, PC1 and PC2 subdomains) | 8030150 | 4003253 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Multidrug efflux transporter AcrB TolC docking domain (DN and DC subdomains) | 8030152 | 4003265 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Multidrug efflux transporter AcrB TolC docking domain (DN and DC subdomains) | 8030154 | 4003265 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Multidrug efflux transporter AcrB transmembrane domain | 8030155 | 4003400 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Multidrug efflux transporter AcrB transmembrane domain | 8030156 | 4003400 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Multidrug efflux transporter AcrB pore domain PN1, PN2, PC1 and PC2 subdomains | 8042523 | 3000503 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Multidrug efflux transporter AcrB pore domain PN1, PN2, PC1 and PC2 subdomains | 8042525 | 3000503 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Multidrug efflux transporter AcrB pore domain PN1, PN2, PC1 and PC2 subdomains | 8042528 | 3000503 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Multidrug efflux transporter AcrB pore domain PN1, PN2, PC1 and PC2 subdomains | 8042529 | 3000503 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Multidrug efflux transporter AcrB TolC docking domain (DN and DC subdomains) | 8042531 | 3000526 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Multidrug efflux transporter AcrB TolC docking domain (DN and DC subdomains) | 8042533 | 3000526 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Multidrug efflux transporter AcrB transmembrane domain | 8042534 | 3000769 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Multidrug efflux transporter AcrB transmembrane domain | 8042535 | 3000769 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | ACR_tran_4th | e1iwgA1 | A: alpha bundles | X: Multidrug efflux transporter AcrB transmembrane domain (From Topology) | H: Multidrug efflux transporter AcrB transmembrane domain (From Topology) | T: Multidrug efflux transporter AcrB transmembrane domain | F: ACR_tran_4th | ECOD (1.6) |
A | ACR_tran_1st | e1iwgA3 | A: a+b two layers | X: Alpha-beta plaits | H: Ferredoxin domains in multidrug efflux transporter | T: Multidrug efflux transporter AcrB pore domain | F: ACR_tran_1st | ECOD (1.6) |
A | ACR_tran_5th | e1iwgA5 | A: a+b two layers | X: Alpha-beta plaits | H: Ferredoxin domains in multidrug efflux transporter | T: Multidrug efflux transporter AcrB pore domain | F: ACR_tran_5th | ECOD (1.6) |
A | ACR_tran_3rd | e1iwgA4 | A: a+b two layers | X: Alpha-beta plaits | H: Ferredoxin domains in multidrug efflux transporter | T: Multidrug efflux transporter AcrB pore domain | F: ACR_tran_3rd | ECOD (1.6) |
A | ACR_tran_6th | e1iwgA6 | A: a+b two layers | X: Alpha-beta plaits | H: Ferredoxin domains in multidrug efflux transporter | T: Multidrug efflux transporter AcrB pore domain | F: ACR_tran_6th | ECOD (1.6) |
A | ACR_tran_2nd | e1iwgA7 | A: a+b two layers | X: Alpha-beta plaits | H: Ferredoxin domains in multidrug efflux transporter | T: Multidrug efflux transporter AcrB TolC docking domain | F: ACR_tran_2nd | ECOD (1.6) |
A | ACR_tran_6th_1 | e1iwgA8 | A: a+b two layers | X: Alpha-beta plaits | H: Ferredoxin domains in multidrug efflux transporter | T: Multidrug efflux transporter AcrB TolC docking domain | F: ACR_tran_6th_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.20.1640.10 | Mainly Alpha | Up-down Bundle | Multidrug efflux transporter AcrB transmembrane fold | Multidrug efflux transporter AcrB transmembrane domain | CATH (4.3.0) |
A | 3.30.70.1430 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | Multidrug efflux transporter AcrB pore domain | CATH (4.3.0) |
A | 3.30.70.1320 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | Multidrug efflux transporter AcrB pore domain like | CATH (4.3.0) |
A | 3.30.2090.10 | Alpha Beta | 2-Layer Sandwich | Multidrug efflux transporter AcrB TolC docking domain | DN and DC subdomains | CATH (4.3.0) |
A | 3.30.70.1440 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | Multidrug efflux transporter AcrB pore domain | CATH (4.3.0) |
AMR Gene: CARD Annotation CARD Database Homepage
Chains | Accession | Short Name | Description | Provenance Source (Version) |
---|---|---|---|---|
ARO:3000216 | acrB | Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. | CARD (3.3.0) |
AMR Gene Family: CARD Annotation CARD Database Homepage
Chains | Accession | Gene Family | Drug Class | Resistance Machanism | Provenance Source (Version) |
---|---|---|---|---|---|
ARO:0010004 | resistance-nodulation-cell division (RND) antibiotic efflux pump | fluoroquinolone antibiotic, cephalosporin, glycylcycline, penam, tetracycline antibiotic, rifamycin antibiotic, phenicol antibiotic, disinfecting agents and antiseptics | antibiotic efflux | CARD (3.3.0) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR027463 | Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains | Homologous Superfamily | |
IPR001036 | Acriflavin resistance protein | Family | |
IPR004764 | Multidrug resistance protein MdtF-like | Family |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
Chains | External Link | Comment |
---|---|---|
MemProtMD | Annotated as membrane protein by MemProtMD |