Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad1ny6a_ Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases Extended AAA-ATPase domain Transcriptional activator sigm54 (NtrC1), C-terminal domain (Aquifex aeolicus ) [TaxId: 63363 ], SCOPe (2.08)
Bd1ny6b_ Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases Extended AAA-ATPase domain Transcriptional activator sigm54 (NtrC1), C-terminal domain (Aquifex aeolicus ) [TaxId: 63363 ], SCOPe (2.08)
Cd1ny6c_ Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases Extended AAA-ATPase domain Transcriptional activator sigm54 (NtrC1), C-terminal domain (Aquifex aeolicus ) [TaxId: 63363 ], SCOPe (2.08)
Dd1ny6d_ Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases Extended AAA-ATPase domain Transcriptional activator sigm54 (NtrC1), C-terminal domain (Aquifex aeolicus ) [TaxId: 63363 ], SCOPe (2.08)
Ed1ny6e_ Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases Extended AAA-ATPase domain Transcriptional activator sigm54 (NtrC1), C-terminal domain (Aquifex aeolicus ) [TaxId: 63363 ], SCOPe (2.08)
Fd1ny6f_ Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases Extended AAA-ATPase domain Transcriptional activator sigm54 (NtrC1), C-terminal domain (Aquifex aeolicus ) [TaxId: 63363 ], SCOPe (2.08)
Gd1ny6g_ Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases Extended AAA-ATPase domain Transcriptional activator sigm54 (NtrC1), C-terminal domain (Aquifex aeolicus ) [TaxId: 63363 ], SCOPe (2.08)
Hd1ny6h_ Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases Extended AAA-ATPase domain Transcriptional activator sigm54 (NtrC1), C-terminal domain (Aquifex aeolicus ) [TaxId: 63363 ], SCOPe (2.08)
Id1ny6i_ Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases Extended AAA-ATPase domain Transcriptional activator sigm54 (NtrC1), C-terminal domain (Aquifex aeolicus ) [TaxId: 63363 ], SCOPe (2.08)
Jd1ny6j_ Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases Extended AAA-ATPase domain Transcriptional activator sigm54 (NtrC1), C-terminal domain (Aquifex aeolicus ) [TaxId: 63363 ], SCOPe (2.08)
Kd1ny6k_ Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases Extended AAA-ATPase domain Transcriptional activator sigm54 (NtrC1), C-terminal domain (Aquifex aeolicus ) [TaxId: 63363 ], SCOPe (2.08)
Ld1ny6l_ Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases Extended AAA-ATPase domain Transcriptional activator sigm54 (NtrC1), C-terminal domain (Aquifex aeolicus ) [TaxId: 63363 ], SCOPe (2.08)
Md1ny6m_ Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases Extended AAA-ATPase domain Transcriptional activator sigm54 (NtrC1), C-terminal domain (Aquifex aeolicus ) [TaxId: 63363 ], SCOPe (2.08)
Nd1ny6n_ Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases Extended AAA-ATPase domain Transcriptional activator sigm54 (NtrC1), C-terminal domain (Aquifex aeolicus ) [TaxId: 63363 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyDNA polymerases epsilon, N-terminal domain (Dpoe2NT)-like 8104150 3002834 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyRecA-like P-loop NTPases 8037077 3002019 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyDNA polymerases epsilon, N-terminal domain (Dpoe2NT)-like 8104150 3002834 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyRecA-like P-loop NTPases 8037077 3002019 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyDNA polymerases epsilon, N-terminal domain (Dpoe2NT)-like 8104150 3002834 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyRecA-like P-loop NTPases 8037077 3002019 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyRecA-like P-loop NTPases 8037077 3002019 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyDNA polymerases epsilon, N-terminal domain (Dpoe2NT)-like 8104150 3002834 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyRecA-like P-loop NTPases 8037077 3002019 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyDNA polymerases epsilon, N-terminal domain (Dpoe2NT)-like 8104150 3002834 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyRecA-like P-loop NTPases 8037077 3002019 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyDNA polymerases epsilon, N-terminal domain (Dpoe2NT)-like 8104150 3002834 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyRecA-like P-loop NTPases 8037077 3002019 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyDNA polymerases epsilon, N-terminal domain (Dpoe2NT)-like 8104150 3002834 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyRecA-like P-loop NTPases 8037077 3002019 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyDNA polymerases epsilon, N-terminal domain (Dpoe2NT)-like 8104150 3002834 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyRecA-like P-loop NTPases 8037077 3002019 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyDNA polymerases epsilon, N-terminal domain (Dpoe2NT)-like 8104150 3002834 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyRecA-like P-loop NTPases 8037077 3002019 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyDNA polymerases epsilon, N-terminal domain (Dpoe2NT)-like 8104150 3002834 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyRecA-like P-loop NTPases 8037077 3002019 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyDNA polymerases epsilon, N-terminal domain (Dpoe2NT)-like 8104150 3002834 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyDNA polymerases epsilon, N-terminal domain (Dpoe2NT)-like 8104150 3002834 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyRecA-like P-loop NTPases 8037077 3002019 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyDNA polymerases epsilon, N-terminal domain (Dpoe2NT)-like 8104150 3002834 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyRecA-like P-loop NTPases 8037077 3002019 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyRecA-like P-loop NTPases 8037077 3002019 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyDNA polymerases epsilon, N-terminal domain (Dpoe2NT)-like 8104150 3002834 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AAtoCe1ny6A1 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: AtoCECOD (1.6)
ASigma54_activate1ny6A2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma54_activatECOD (1.6)
BAtoCe1ny6B1 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: AtoCECOD (1.6)
BSigma54_activate1ny6B2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma54_activatECOD (1.6)
CAtoCe1ny6C1 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: AtoCECOD (1.6)
CSigma54_activate1ny6C2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma54_activatECOD (1.6)
DAtoCe1ny6D1 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: AtoCECOD (1.6)
DSigma54_activate1ny6D2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma54_activatECOD (1.6)
EAtoCe1ny6E1 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: AtoCECOD (1.6)
ESigma54_activate1ny6E2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma54_activatECOD (1.6)
FAtoCe1ny6F1 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: AtoCECOD (1.6)
FSigma54_activate1ny6F2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma54_activatECOD (1.6)
GAtoCe1ny6G1 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: AtoCECOD (1.6)
GSigma54_activate1ny6G2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma54_activatECOD (1.6)
HAtoCe1ny6H1 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: AtoCECOD (1.6)
HSigma54_activate1ny6H2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma54_activatECOD (1.6)
IAtoCe1ny6I1 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: AtoCECOD (1.6)
ISigma54_activate1ny6I2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma54_activatECOD (1.6)
JAtoCe1ny6J1 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: AtoCECOD (1.6)
JSigma54_activate1ny6J2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma54_activatECOD (1.6)
KAtoCe1ny6K1 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: AtoCECOD (1.6)
KSigma54_activate1ny6K2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma54_activatECOD (1.6)
LAtoCe1ny6L1 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: AtoCECOD (1.6)
LSigma54_activate1ny6L2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma54_activatECOD (1.6)
MAtoCe1ny6M1 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: AtoCECOD (1.6)
MSigma54_activate1ny6M2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma54_activatECOD (1.6)
NAtoCe1ny6N1 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: AtoCECOD (1.6)
NSigma54_activate1ny6N2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma54_activatECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (4.3.0)
A1.10.8.60 Mainly Alpha Orthogonal Bundle Helicase, Ruva Protein domain 3CATH (4.3.0)
B3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (4.3.0)
B1.10.8.60 Mainly Alpha Orthogonal Bundle Helicase, Ruva Protein domain 3CATH (4.3.0)
C3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (4.3.0)
C1.10.8.60 Mainly Alpha Orthogonal Bundle Helicase, Ruva Protein domain 3CATH (4.3.0)
D3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (4.3.0)
D1.10.8.60 Mainly Alpha Orthogonal Bundle Helicase, Ruva Protein domain 3CATH (4.3.0)
E3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (4.3.0)
E1.10.8.60 Mainly Alpha Orthogonal Bundle Helicase, Ruva Protein domain 3CATH (4.3.0)
F3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (4.3.0)
F1.10.8.60 Mainly Alpha Orthogonal Bundle Helicase, Ruva Protein domain 3CATH (4.3.0)
G3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (4.3.0)
G1.10.8.60 Mainly Alpha Orthogonal Bundle Helicase, Ruva Protein domain 3CATH (4.3.0)
H3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (4.3.0)
H1.10.8.60 Mainly Alpha Orthogonal Bundle Helicase, Ruva Protein domain 3CATH (4.3.0)
I3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (4.3.0)
I1.10.8.60 Mainly Alpha Orthogonal Bundle Helicase, Ruva Protein domain 3CATH (4.3.0)
J3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (4.3.0)
J1.10.8.60 Mainly Alpha Orthogonal Bundle Helicase, Ruva Protein domain 3CATH (4.3.0)
K3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (4.3.0)
K1.10.8.60 Mainly Alpha Orthogonal Bundle Helicase, Ruva Protein domain 3CATH (4.3.0)
L3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (4.3.0)
L1.10.8.60 Mainly Alpha Orthogonal Bundle Helicase, Ruva Protein domain 3CATH (4.3.0)
M3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (4.3.0)
M1.10.8.60 Mainly Alpha Orthogonal Bundle Helicase, Ruva Protein domain 3CATH (4.3.0)
N3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (4.3.0)
N1.10.8.60 Mainly Alpha Orthogonal Bundle Helicase, Ruva Protein domain 3CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF00158Sigma-54 interaction domain (Sigma54_activat)Sigma-54 interaction domain- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
transcriptional regulator (NtrC family) -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR009057Homedomain-like superfamilyHomologous Superfamily
A, B, C, D, E
IPR011006CheY-like superfamilyHomologous Superfamily
A, B, C, D, E
IPR002197DNA binding HTH domain, Fis-typeDomain
A, B, C, D, E
IPR001789Signal transduction response regulator, receiver domainDomain
A, B, C, D, E
IPR002078RNA polymerase sigma factor 54 interaction domainDomain
A, B, C, D, E
IPR025662Sigma-54 interaction domain, ATP-binding site 1Binding Site
A, B, C, D, E
IPR003593AAA+ ATPase domainDomain
A, B, C, D, E
IPR025943Sigma-54 interaction domain, ATP-binding site 2Binding Site
A, B, C, D, E
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily