1P3W
X-ray crystal structure of E. coli IscS
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | d1p3wb_ | Alpha and beta proteins (a/b) | PLP-dependent transferase-like | PLP-dependent transferases | Cystathionine synthase-like | Cysteine desulfurase IscS | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
B [auth A] | d1p3wa_ | Alpha and beta proteins (a/b) | PLP-dependent transferase-like | PLP-dependent transferases | Cystathionine synthase-like | Cysteine desulfurase IscS | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth B] | SCOP2B Superfamily | PLP-dependent transferases | 8034590 | 3000954 | SCOP2B (2022-06-29) |
B [auth A] | SCOP2 Family | Cystathionine synthase-like | 8022210 | 4000672 | SCOP2 (2022-06-29) |
B [auth A] | SCOP2 Superfamily | PLP-dependent transferases | 8034590 | 3000954 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | Aminotran_5_C | e1p3wB3 | A: a+b two layers | X: C-terminal domain in some PLP-dependent transferases (From Topology) | H: C-terminal domain in some PLP-dependent transferases (From Topology) | T: C-terminal domain in some PLP-dependent transferases | F: Aminotran_5_C | ECOD (1.6) |
A [auth B] | Aminotran_5_N | e1p3wB2 | A: a/b three-layered sandwiches | X: PLP-dependent transferases (From Topology) | H: PLP-dependent transferases (From Topology) | T: PLP-dependent transferases | F: Aminotran_5_N | ECOD (1.6) |
B [auth A] | Aminotran_5_C | e1p3wA1 | A: a+b two layers | X: C-terminal domain in some PLP-dependent transferases (From Topology) | H: C-terminal domain in some PLP-dependent transferases (From Topology) | T: C-terminal domain in some PLP-dependent transferases | F: Aminotran_5_C | ECOD (1.6) |
B [auth A] | Aminotran_5_N | e1p3wA2 | A: a/b three-layered sandwiches | X: PLP-dependent transferases (From Topology) | H: PLP-dependent transferases (From Topology) | T: PLP-dependent transferases | F: Aminotran_5_N | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth B] | 3.90.1150.10 | Alpha Beta | Alpha-Beta Complex | Aspartate Aminotransferase, domain 1 | Aspartate Aminotransferase, domain 1 | CATH (4.3.0) |
A [auth B] | 3.40.640.10 | Alpha Beta | 3-Layer(aba) Sandwich | Aspartate Aminotransferase | domain 2 | CATH (4.3.0) |
B [auth A] | 3.90.1150.10 | Alpha Beta | Alpha-Beta Complex | Aspartate Aminotransferase, domain 1 | Aspartate Aminotransferase, domain 1 | CATH (4.3.0) |
B [auth A] | 3.40.640.10 | Alpha Beta | 3-Layer(aba) Sandwich | Aspartate Aminotransferase | domain 2 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth B], B [auth A] | PF00266 | Aminotransferase class-V (Aminotran_5) | Aminotransferase class-V | This domain is found in amino transferases, and other enzymes including cysteine desulphurase EC:4.4.1.-. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth B], B [auth A] | IPR020578 | Aminotransferase class-V, pyridoxal-phosphate binding site | Binding Site |
A [auth B], B [auth A] | IPR000192 | Aminotransferase class V domain | Domain |
A [auth B], B [auth A] | IPR010240 | Cysteine desulfurase IscS | Family |
A [auth B], B [auth A] | IPR016454 | Cysteine desulfurase | Family |
A [auth B], B [auth A] | IPR015421 | Pyridoxal phosphate-dependent transferase, major domain | Homologous Superfamily |
A [auth B], B [auth A] | IPR015422 | Pyridoxal phosphate-dependent transferase, small domain | Homologous Superfamily |
A [auth B], B [auth A] | IPR015424 | Pyridoxal phosphate-dependent transferase | Homologous Superfamily |