2HG0
Structure of the West Nile Virus envelope glycoprotein
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d2hg0a2 | All beta proteins | Immunoglobulin-like beta-sandwich | E set domains | automated matches | automated matches | (West Nile virus ) [TaxId: 11082 ], | SCOPe (2.08) |
A | d2hg0a1 | Membrane and cell surface proteins and peptides | Viral glycoprotein, central and dimerisation domains | Viral glycoprotein, central and dimerisation domains | automated matches | automated matches | (West Nile virus ) [TaxId: 11082 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Flavi_glycop_C | e2hg0A1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Flavi_glycop_C | ECOD (1.6) |
A | Flavi_glycoprot | e2hg0A2 | A: beta complex topology | X: Viral glycoprotein, central and dimerisation domains-like | H: Viral glycoprotein, central and dimerisation domains (From Topology) | T: Viral glycoprotein, central and dimerisation domains | F: Flavi_glycoprot | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.60.98.10 | Mainly Beta | Sandwich | Tick-borne Encephalitis virus Glycoprotein | domain 1 | CATH (4.3.0) |
A | 3.30.67.10 | Alpha Beta | 2-Layer Sandwich | Viral Envelope Glycoprotein | domain 2 | CATH (4.3.0) |
A | 3.30.387.10 | Alpha Beta | 2-Layer Sandwich | Viral Envelope Glycoprotein | domain 3 | CATH (4.3.0) |
A | 2.60.40.350 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00869 | Flavivirus glycoprotein, central and dimerisation domains (Flavi_glycoprot) | Flavivirus glycoprotein, central and dimerisation domains | - | Domain | |
PF02832 | Flavivirus glycoprotein, immunoglobulin-like domain (Flavi_glycop_C) | Flavivirus glycoprotein, immunoglobulin-like domain | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR011998 | Envelope glycoprotein E, central and dimerisation domain, flavivirus | Domain | |
IPR013755 | Flaviviral glycoprotein E, central domain, subdomain 1 | Homologous Superfamily | |
IPR038055 | Flaviviral glycoprotein E, dimerisation domain | Homologous Superfamily | |
IPR014756 | Immunoglobulin E-set | Homologous Superfamily | |
IPR027287 | Glycoprotein E, immunoglobulin-like domain, flavivirus | Domain | |
IPR013756 | Flaviviral glycoprotein E, central domain, subdomain 2 | Homologous Superfamily | |
IPR000336 | Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamily | Homologous Superfamily | |
IPR036253 | Flavivirus glycoprotein, central and dimerisation domain superfamily | Homologous Superfamily |
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Bitopic proteins | Viral membrane fusion glycoprotein | Flavivirus glycoprotein |