2Z5U
Crystal structure of Lysine-specific histone demethylase 1
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d2z5ua1 | All alpha proteins | DNA/RNA-binding 3-helical bundle | Homeodomain-like | SWIRM domain | Lysine-specific histone demethylase 1, LSD1 | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
A | d2z5ua2 | Alpha and beta proteins (a/b) | FAD/NAD(P)-binding domain | FAD/NAD(P)-binding domain | FAD-linked reductases, N-terminal domain | Lysine-specific histone demethylase 1, LSD1 | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
A | d2z5ua3 | Alpha and beta proteins (a+b) | FAD-linked reductases, C-terminal domain | FAD-linked reductases, C-terminal domain | L-aminoacid/polyamine oxidase | Lysine-specific histone demethylase 1, LSD1 | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | LSD1 insert domain-like | 8056826 | 3002361 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Flavoreductase-like | 8017500 | 3000055 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Homeodomain-like | 8001517 | 3000001 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Flavoreductase-like | 8017500 | 3000055 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | SWIRM | e2z5uA1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: SWIRM | ECOD (1.6) |
A | Amino_oxidase_2nd | e2z5uA2 | A: a+b two layers | X: FAD-linked reductases, C-terminal domain-like | H: FAD-linked reductases-C (From Topology) | T: FAD-linked reductases-C | F: Amino_oxidase_2nd | ECOD (1.6) |
A | Amino_oxidase_1st | e2z5uA3 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: Amino_oxidase_1st | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.10.10 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | CATH (4.3.0) |
A | 1.10.287.80 | Mainly Alpha | Orthogonal Bundle | Helix Hairpins | ATP synthase, gamma subunit, helix hairpin domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF04433 | SWIRM domain (SWIRM) | SWIRM domain | This SWIRM domain is a small alpha-helical domain of about 85 amino acid residues found in chromosomal proteins. It contains a helix-turn helix motif and binds to DNA [1]. | Domain | |
PF01593 | Flavin containing amine oxidoreductase (Amino_oxidase) | Flavin containing amine oxidoreductase | This family consists of various amine oxidases, including maze polyamine oxidase (PAO) [1] and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR002937 | Amine oxidase | Domain | |
IPR017366 | Lysine-specific histone demethylase | Family | |
IPR009057 | Homedomain-like superfamily | Homologous Superfamily | |
IPR036388 | Winged helix-like DNA-binding domain superfamily | Homologous Superfamily | |
IPR007526 | SWIRM domain | Domain | |
IPR036188 | FAD/NAD(P)-binding domain superfamily | Homologous Superfamily | |
IPR050281 | Flavin monoamine oxidase and related enzymes | Family |
Pharos: Disease Associations Pharos Homepage Annotation
Chains | Drug Target   | Associated Disease |
---|---|---|
O60341 | :