3GPA
Crystal structure of the Mimivirus NDK N62L mutant complexed with CDP
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B [auth C] | SCOP2B Superfamily | Nucleoside diphosphate kinase, NDK | 8037740 | 3001175 | SCOP2B (2022-06-29) |
D [auth B] | SCOP2B Superfamily | Nucleoside diphosphate kinase, NDK | 8037740 | 3001175 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Nucleoside diphosphate kinase, NDK | 8037740 | 3001175 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Nucleoside diphosphate kinase, NDK | 8037740 | 3001175 | SCOP2B (2022-06-29) |
C [auth E] | SCOP2B Superfamily | Nucleoside diphosphate kinase, NDK | 8037740 | 3001175 | SCOP2B (2022-06-29) |
E [auth D] | SCOP2B Superfamily | Nucleoside diphosphate kinase, NDK | 8037740 | 3001175 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth C] | NDK | e3gpaC1 | A: a+b two layers | X: Alpha-beta plaits | H: Nucleoside diphosphate kinases (From Topology) | T: Nucleoside diphosphate kinases | F: NDK | ECOD (1.6) |
D [auth B] | NDK | e3gpaB1 | A: a+b two layers | X: Alpha-beta plaits | H: Nucleoside diphosphate kinases (From Topology) | T: Nucleoside diphosphate kinases | F: NDK | ECOD (1.6) |
F | NDK | e3gpaF1 | A: a+b two layers | X: Alpha-beta plaits | H: Nucleoside diphosphate kinases (From Topology) | T: Nucleoside diphosphate kinases | F: NDK | ECOD (1.6) |
A | NDK | e3gpaA1 | A: a+b two layers | X: Alpha-beta plaits | H: Nucleoside diphosphate kinases (From Topology) | T: Nucleoside diphosphate kinases | F: NDK | ECOD (1.6) |
C [auth E] | NDK | e3gpaE1 | A: a+b two layers | X: Alpha-beta plaits | H: Nucleoside diphosphate kinases (From Topology) | T: Nucleoside diphosphate kinases | F: NDK | ECOD (1.6) |
E [auth D] | NDK | e3gpaD1 | A: a+b two layers | X: Alpha-beta plaits | H: Nucleoside diphosphate kinases (From Topology) | T: Nucleoside diphosphate kinases | F: NDK | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B [auth C] | 3.30.70.141 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | Nucleoside diphosphate kinase-like domain | CATH (4.3.0) |
D [auth B] | 3.30.70.141 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | Nucleoside diphosphate kinase-like domain | CATH (4.3.0) |
F | 3.30.70.141 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | Nucleoside diphosphate kinase-like domain | CATH (4.3.0) |
A | 3.30.70.141 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | Nucleoside diphosphate kinase-like domain | CATH (4.3.0) |
C [auth E] | 3.30.70.141 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | Nucleoside diphosphate kinase-like domain | CATH (4.3.0) |
E [auth D] | 3.30.70.141 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | Nucleoside diphosphate kinase-like domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00334 | Nucleoside diphosphate kinase (NDK) | Nucleoside diphosphate kinase | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR023005 | Nucleoside diphosphate kinase, active site | Active Site | |
IPR034907 | Nucleoside diphosphate kinase-like domain | Domain | |
IPR036850 | Nucleoside diphosphate kinase-like domain superfamily | Homologous Superfamily | |
IPR001564 | Nucleoside diphosphate kinase | Family |