3U7Y
Structure of NIH45-46 Fab in complex with gp120 of 93TH057 HIV
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- IMGT Antibody Annotation
- SAbDab Antibody Annotation
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Pharos: Disease Associations
- Protein Modification Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C [auth L] | d3u7yl1 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | automated matches | automated matches | human (Homo sapiens ) [TaxId: 9606 ], human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth H] | SCOP2B Superfamily | Immunoglobulin (Ig) domain-like | 8091519 | 3000071 | SCOP2B (2022-06-29) |
B [auth G] | SCOP2B Superfamily | gp120 core | 8096276 | 3001390 | SCOP2B (2022-06-29) |
C [auth L] | SCOP2B Superfamily | Immunoglobulin (Ig) domain-like | 8091527 | 3000071 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth H] | C1-set_1 | e3u7yH2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
A [auth H] | V-set_12 | e3u7yH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_12 | ECOD (1.6) |
B [auth G] | GP120_3rd | e3u7yG2 | A: a+b two layers | X: Ribosomal protein L31e-like | H: Ribosomal protein L31e/gp120 outer domain (From Topology) | T: Ribosomal protein L31e/gp120 outer domain | F: GP120_3rd | ECOD (1.6) |
B [auth G] | GP120_1st | e3u7yG1 | A: a+b two layers | X: gp120 inner domain (From Topology) | H: gp120 inner domain (From Topology) | T: gp120 inner domain | F: GP120_1st | ECOD (1.6) |
C [auth L] | C1-set_4 | e3u7yL2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_4 | ECOD (1.6) |
C [auth L] | V-set | e3u7yL1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth H] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
B [auth G] | 2.170.40.20 | Mainly Beta | Beta Complex | HIV Envelope Protein Gp120 | Chain G | CATH (4.3.0) |
C [auth L] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
A [auth H] | NIH45-46 mAb, anti-gp120 [HIV-1] | VH-CH1 | Homo sapiens (human) | IGHV1-2*02, IGHV1-18*01, IGHV1-18*04, IGHJ2*01, IGHG1*03 | V-DOMAIN VH, C-DOMAIN CH1 | IG | FAB-GAMMA-1_KAPPA | IMGT (202449-0) |
C [auth L] | NIH45-46 mAb, anti-gp120 [HIV-1] | L-KAPPA | Homo sapiens (human) | IGKV3-11*01, IGKV3-11*02, IGKV3D-11*02, IGKJ1*01, IGKC*01 | V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA | IG | FAB-GAMMA-1_KAPPA | IMGT (202449-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
A [auth H] | Heavy Chain | IGHV1 | - | envelope glycoprotein gp160 | SAbDab (2024-12-13) |
C [auth L] | Light Chain | IGKV3 | Kappa | envelope glycoprotein gp160 | SAbDab (2024-12-13) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth H] | PF07654 | Immunoglobulin C1-set domain (C1-set) | Immunoglobulin C1-set domain | - | Domain |
B [auth G] | PF00516 | Envelope glycoprotein GP120 (GP120) | Envelope glycoprotein GP120 | - | Family |
C [auth L] | PF07654 | Immunoglobulin C1-set domain (C1-set) | Immunoglobulin C1-set domain | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth H] | IPR036179 | Immunoglobulin-like domain superfamily | Homologous Superfamily |
A [auth H] | IPR050380 | Immune Recognition and Response Modulators | Family |
A [auth H] | IPR003597 | Immunoglobulin C1-set | Domain |
A [auth H] | IPR013783 | Immunoglobulin-like fold | Homologous Superfamily |
A [auth H] | IPR007110 | Immunoglobulin-like domain | Domain |
A [auth H] | IPR003006 | Immunoglobulin/major histocompatibility complex, conserved site | Conserved Site |
B [auth G] | IPR000777 | Human immunodeficiency virus 1, envelope glycoprotein Gp120 | Domain |
B [auth G] | IPR036377 | Gp120 core superfamily | Homologous Superfamily |
C [auth L] | IPR036179 | Immunoglobulin-like domain superfamily | Homologous Superfamily |
C [auth L] | IPR050160 | Major Histocompatibility Complex/Immunoglobulin | Family |
C [auth L] | IPR003597 | Immunoglobulin C1-set | Domain |
C [auth L] | IPR013783 | Immunoglobulin-like fold | Homologous Superfamily |
C [auth L] | IPR007110 | Immunoglobulin-like domain | Domain |
C [auth L] | IPR003006 | Immunoglobulin/major histocompatibility complex, conserved site | Conserved Site |