3ZDV

Crystal structure of the LecB lectin from Pseudomonas aeruginosa in complex with Methyl 6-(2,4,6-trimethylphenylsulfonylamido)-6-deoxy-alpha-D-mannopyranoside

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d3zdvb_	All beta proteins	Calcium-mediated lectin	Calcium-mediated lectin	Calcium-mediated lectin	Fucose-binding lectin II (PA-LII)	(Pseudomonas aeruginosa PAO1 ) [TaxId: 208964 ],	SCOPe (2.08)
C	d3zdvc_	All beta proteins	Calcium-mediated lectin	Calcium-mediated lectin	Calcium-mediated lectin	Fucose-binding lectin II (PA-LII)	(Pseudomonas aeruginosa PAO1 ) [TaxId: 208964 ],	SCOPe (2.08)
D	d3zdvd_	All beta proteins	Calcium-mediated lectin	Calcium-mediated lectin	Calcium-mediated lectin	Fucose-binding lectin II (PA-LII)	(Pseudomonas aeruginosa PAO1 ) [TaxId: 208964 ],	SCOPe (2.08)
A	d3zdva_	All beta proteins	Calcium-mediated lectin	Calcium-mediated lectin	Calcium-mediated lectin	Fucose-binding lectin II (PA-LII)	(Pseudomonas aeruginosa PAO1 ) [TaxId: 208964 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Calcium-mediated lectin	8042940	3001391	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Calcium-mediated lectin	8042940	3001391	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Calcium-mediated lectin	8042940	3001391	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Calcium-mediated lectin	8042940	3001391	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	PA-IIL	e3zdvB1	A: beta sandwiches	X: jelly-roll	H: Calcium-mediated lectin (From Topology)	T: Calcium-mediated lectin	F: PA-IIL	ECOD (1.6)
C	PA-IIL	e3zdvC1	A: beta sandwiches	X: jelly-roll	H: Calcium-mediated lectin (From Topology)	T: Calcium-mediated lectin	F: PA-IIL	ECOD (1.6)
D	PA-IIL	e3zdvD1	A: beta sandwiches	X: jelly-roll	H: Calcium-mediated lectin (From Topology)	T: Calcium-mediated lectin	F: PA-IIL	ECOD (1.6)
A	PA-IIL	e3zdvA1	A: beta sandwiches	X: jelly-roll	H: Calcium-mediated lectin (From Topology)	T: Calcium-mediated lectin	F: PA-IIL	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	2.60.120.400	Mainly Beta	Sandwich	Jelly Rolls	Calcium-mediated lectin	CATH (4.3.0)
C	2.60.120.400	Mainly Beta	Sandwich	Jelly Rolls	Calcium-mediated lectin	CATH (4.3.0)
D	2.60.120.400	Mainly Beta	Sandwich	Jelly Rolls	Calcium-mediated lectin	CATH (4.3.0)
A	2.60.120.400	Mainly Beta	Sandwich	Jelly Rolls	Calcium-mediated lectin	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF07472	Fucose-binding lectin II (PA-IIL) (PA-IIL)	Fucose-binding lectin II (PA-IIL)	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	FUCOSE-BINDING LECTIN PA-IIL	binding carbohydrate binding cation binding ion binding metal ion binding small molecule binding	cell aggregation biofilm formation biological process involved in intraspecies interaction between organisms single-species biofilm formation cellular process aggregation of unicellular organisms	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR036684	Calcium-mediated lectin superfamily	Homologous Superfamily
A, B, C, D	IPR010907	Calcium-mediated lectin	Domain
A, B, C, D	IPR016927	Lectin, sugar-binding	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.