Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilySecretin repeat domain-like 8045242 4004368 SCOP2 (2022-06-29)
ASCOP2 FamilySecretin repeat domain-like 8057212 4004368 SCOP2 (2022-06-29)
ASCOP2 FamilySTN domain-like 8057217 4006665 SCOP2 (2022-06-29)
ASCOP2 SuperfamilySecretin repeat domain-like 8057215 3002387 SCOP2 (2022-06-29)
ASCOP2 SuperfamilySecretin repeat domain-like 8057216 3002387 SCOP2 (2022-06-29)
ASCOP2 SuperfamilySTN domain-like 8057219 3002388 SCOP2 (2022-06-29)
BSCOP2B SuperfamilySecretin repeat domain-like 8057215 3002387 SCOP2B (2022-06-29)
BSCOP2B SuperfamilySTN domain-like 8057219 3002388 SCOP2B (2022-06-29)
BSCOP2B SuperfamilySecretin repeat domain-like 8057216 3002387 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ASecretin_Ne4e9jA2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: Ring-building motif II in type III secretion system (From Topology)T: Ring-building motif II in type III secretion systemF: Secretin_NECOD (1.6)
Atype_II_gspDe4e9jA4 A: a+b complex topologyX: N0 domain in phage tail proteins and secretins-likeH: N0 domain in phage tail proteins and secretins (From Topology)T: N0 domain in phage tail proteins and secretinsF: type_II_gspDECOD (1.6)
BSecretin_Ne4e9jB2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: Ring-building motif II in type III secretion system (From Topology)T: Ring-building motif II in type III secretion systemF: Secretin_NECOD (1.6)
Btype_II_gspDe4e9jB4 A: a+b complex topologyX: N0 domain in phage tail proteins and secretins-likeH: N0 domain in phage tail proteins and secretins (From Topology)T: N0 domain in phage tail proteins and secretinsF: type_II_gspDECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.30.1370.120 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8 Chain: A, domain 1CATH (4.3.0)
B3.30.1370.120 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8 Chain: A, domain 1CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF03958Bacterial type II/III secretion system short domain (Secretin_N)Bacterial type II/III secretion system short domainThis is a short, often repeated, domain found in bacterial type II/III secretory system proteins. All previous NolW-like domains fall into this family.Domain
A, B
PF21305GspD-like, N0 domain (type_II_gspD_N0)GspD-like, N0 domainGspD is a type II general secretion pathway protein involved in protein export. This is the N0 domain found at the N-terminal of GspD type II secretins and its close homologues [1-5]. These proteins form a dodecameric ring, in which the N0 domain med ...GspD is a type II general secretion pathway protein involved in protein export. This is the N0 domain found at the N-terminal of GspD type II secretins and its close homologues [1-5]. These proteins form a dodecameric ring, in which the N0 domain mediate extensive contacts suggesting that dodecameric N0 ring is an important feature of T2SS secretins [4]. This domain is also found in virion export proteins, proteins thought to form a channel across the host outer membrane for the purposes of extruding the bacteriophage.
Domain