4FF4
N4 mini-vRNAP transcription initiation complex, 4 min after soaking GTP, ATP and Mn
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | EUF07994 | e4ff4A4 | A: alpha arrays | X: helical bundle in Bacillus stearothermophilus-like DNA polymerase I (From Topology) | H: helical bundle in Bacillus stearothermophilus-like DNA polymerase I (From Topology) | T: helical bundle in Bacillus stearothermophilus-like DNA polymerase I | F: EUF07994 | ECOD (1.6) |
A | EUF07996 | e4ff4A3 | A: alpha arrays | X: inserted helical bundle subdomain in T7 RNA polymerase (From Topology) | H: inserted helical bundle subdomain in T7 RNA polymerase (From Topology) | T: inserted helical bundle subdomain in T7 RNA polymerase | F: EUF07996 | ECOD (1.6) |
A | EUF08099 | e4ff4A2 | A: alpha bundles | X: fingers domain in bacteriophage RB69-like DNA polymerase I (From Topology) | H: fingers domain in bacteriophage RB69-like DNA polymerase I (From Topology) | T: fingers domain in bacteriophage RB69-like DNA polymerase I | F: EUF08099 | ECOD (1.6) |
A | EUF08357 | e4ff4A5 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: Adenylyl and guanylyl cyclase catalytic domain-like | F: EUF08357 | ECOD (1.6) |
C [auth B] | EUF07994 | e4ff4B5 | A: alpha arrays | X: helical bundle in Bacillus stearothermophilus-like DNA polymerase I (From Topology) | H: helical bundle in Bacillus stearothermophilus-like DNA polymerase I (From Topology) | T: helical bundle in Bacillus stearothermophilus-like DNA polymerase I | F: EUF07994 | ECOD (1.6) |
C [auth B] | EUF07996 | e4ff4B3 | A: alpha arrays | X: inserted helical bundle subdomain in T7 RNA polymerase (From Topology) | H: inserted helical bundle subdomain in T7 RNA polymerase (From Topology) | T: inserted helical bundle subdomain in T7 RNA polymerase | F: EUF07996 | ECOD (1.6) |
C [auth B] | EUF08099 | e4ff4B1 | A: alpha bundles | X: fingers domain in bacteriophage RB69-like DNA polymerase I (From Topology) | H: fingers domain in bacteriophage RB69-like DNA polymerase I (From Topology) | T: fingers domain in bacteriophage RB69-like DNA polymerase I | F: EUF08099 | ECOD (1.6) |
C [auth B] | EUF08357 | e4ff4B2 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: Adenylyl and guanylyl cyclase catalytic domain-like | F: EUF08357 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, C [auth B] | PF21894 | Bacteriophage N4 RNA polymerase, helical domain (N4_RNAP_helical) | Bacteriophage N4 RNA polymerase, helical domain | This is a helical domain, also known as 'Fingers subdomain', found in the bacteriophage N4 virion RNA polymerase [1]. This domain possesses two essential functions of the RNAP: the N-terminal part plays a role in the nucleotide addition cycle, wherea ... | Domain |
A, C [auth B] | PF21769 | Virion DNA-directed RNA polymerase domain (vRNAP_dom) | Virion DNA-directed RNA polymerase domain | This domain is found in Virion DNA-directed RNA polymerase from Bacteriophage N4 (vRNAP), responsible for the transcription of the early region of the double-stranded linear DNA genome of the lytic coliphage. This domain adopts a mostly alpha-helical ... | Domain |
A, C [auth B] | PF21867 | Virion DNA-directed RNA polymerase domain (vRNAP_dom_2) | Virion DNA-directed RNA polymerase domain | This domain is found in Virion DNA-directed RNA polymerase from Bacteriophage N4 (vRNAP), which is injected into the host upon infection and transcribes the phage early genes from promoters that have a 5-bp stem-3 nt loop hairpin structure. This entr ... | Domain |
A, C [auth B] | PF21624 | Virion DNA-directed RNA polymerase, plug insertion (vRNAP_plug) | Virion DNA-directed RNA polymerase, plug insertion | This domain is found in Virion DNA-directed RNA polymerase from Bacteriophage N4 (vRNAP), responsible for the transcription of the early region of the double-stranded linear DNA genome of the lytic coliphage. This entry represents a short insertion t ... | Domain |