4IND

The Triple Jelly Roll Fold and Turret Assembly in an Archaeal Virus

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
I	PF21876	e4indI7	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Galactose-binding domain-like	F: PF21876	ECOD (1.6)
I	PF21878	e4indI9	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Galactose-binding domain-like	F: PF21878	ECOD (1.6)
I	PF21879	e4indI8	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF21879	ECOD (1.6)
N	PF21876	e4indN7	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Galactose-binding domain-like	F: PF21876	ECOD (1.6)
N	PF21878	e4indN9	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Galactose-binding domain-like	F: PF21878	ECOD (1.6)
N	PF21879	e4indN8	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF21879	ECOD (1.6)
O	PF21876	e4indO7	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Galactose-binding domain-like	F: PF21876	ECOD (1.6)
O	PF21878	e4indO9	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Galactose-binding domain-like	F: PF21878	ECOD (1.6)
O	PF21879	e4indO8	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF21879	ECOD (1.6)
Q	PF21876	e4indQ7	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Galactose-binding domain-like	F: PF21876	ECOD (1.6)
Q	PF21878	e4indQ9	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Galactose-binding domain-like	F: PF21878	ECOD (1.6)
Q	PF21879	e4indQ8	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF21879	ECOD (1.6)
A	PF21876	e4indA6	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Galactose-binding domain-like	F: PF21876	ECOD (1.6)
A	PF21878	e4indA3	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Galactose-binding domain-like	F: PF21878	ECOD (1.6)
A	PF21879	e4indA7	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF21879	ECOD (1.6)
B	PF21876	e4indB7	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Galactose-binding domain-like	F: PF21876	ECOD (1.6)
B	PF21878	e4indB9	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Galactose-binding domain-like	F: PF21878	ECOD (1.6)
B	PF21879	e4indB8	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF21879	ECOD (1.6)
C	PF21876	e4indC7	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Galactose-binding domain-like	F: PF21876	ECOD (1.6)
C	PF21878	e4indC9	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Galactose-binding domain-like	F: PF21878	ECOD (1.6)
C	PF21879	e4indC8	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF21879	ECOD (1.6)
D	PF21876	e4indD7	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Galactose-binding domain-like	F: PF21876	ECOD (1.6)
D	PF21878	e4indD9	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Galactose-binding domain-like	F: PF21878	ECOD (1.6)
D	PF21879	e4indD8	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF21879	ECOD (1.6)
E	PF21876	e4indE7	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Galactose-binding domain-like	F: PF21876	ECOD (1.6)
E	PF21878	e4indE9	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Galactose-binding domain-like	F: PF21878	ECOD (1.6)
E	PF21879	e4indE8	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF21879	ECOD (1.6)
F	PF21876	e4indF7	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Galactose-binding domain-like	F: PF21876	ECOD (1.6)
F	PF21878	e4indF9	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Galactose-binding domain-like	F: PF21878	ECOD (1.6)
F	PF21879	e4indF8	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF21879	ECOD (1.6)
G	PF21876	e4indG7	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Galactose-binding domain-like	F: PF21876	ECOD (1.6)
G	PF21878	e4indG9	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Galactose-binding domain-like	F: PF21878	ECOD (1.6)
G	PF21879	e4indG8	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF21879	ECOD (1.6)
H	PF21876	e4indH7	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Galactose-binding domain-like	F: PF21876	ECOD (1.6)
H	PF21878	e4indH9	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Galactose-binding domain-like	F: PF21878	ECOD (1.6)
H	PF21879	e4indH8	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF21879	ECOD (1.6)
J	PF21876	e4indJ7	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Galactose-binding domain-like	F: PF21876	ECOD (1.6)
J	PF21878	e4indJ9	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Galactose-binding domain-like	F: PF21878	ECOD (1.6)
J	PF21879	e4indJ8	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF21879	ECOD (1.6)
K	PF21876	e4indK7	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Galactose-binding domain-like	F: PF21876	ECOD (1.6)
K	PF21878	e4indK9	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Galactose-binding domain-like	F: PF21878	ECOD (1.6)
K	PF21879	e4indK8	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF21879	ECOD (1.6)
L	PF21876	e4indL7	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Galactose-binding domain-like	F: PF21876	ECOD (1.6)
L	PF21878	e4indL9	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Galactose-binding domain-like	F: PF21878	ECOD (1.6)
L	PF21879	e4indL8	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF21879	ECOD (1.6)
M	PF21876	e4indM7	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Galactose-binding domain-like	F: PF21876	ECOD (1.6)
M	PF21878	e4indM9	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Galactose-binding domain-like	F: PF21878	ECOD (1.6)
M	PF21879	e4indM8	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF21879	ECOD (1.6)
P	PF21876	e4indP7	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Galactose-binding domain-like	F: PF21876	ECOD (1.6)
P	PF21878	e4indP9	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Galactose-binding domain-like	F: PF21878	ECOD (1.6)
P	PF21879	e4indP8	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF21879	ECOD (1.6)
R	PF21876	e4indR7	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Galactose-binding domain-like	F: PF21876	ECOD (1.6)
R	PF21878	e4indR9	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Galactose-binding domain-like	F: PF21878	ECOD (1.6)
R	PF21879	e4indR8	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF21879	ECOD (1.6)
S	PF21876	e4indS7	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Galactose-binding domain-like	F: PF21876	ECOD (1.6)
S	PF21878	e4indS9	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Galactose-binding domain-like	F: PF21878	ECOD (1.6)
S	PF21879	e4indS8	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF21879	ECOD (1.6)
T	PF21876	e4indT7	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Galactose-binding domain-like	F: PF21876	ECOD (1.6)
T	PF21878	e4indT9	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Galactose-binding domain-like	F: PF21878	ECOD (1.6)
T	PF21879	e4indT8	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: PF21879	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Provenance Source (Version)
I	2.60.120.1320	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.2.0)
I	2.60.120.1310	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.2.0)
I	2.60.120.1330	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.2.0)
N	2.60.120.1320	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.2.0)
N	2.60.120.1310	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.2.0)
N	2.60.120.1330	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.2.0)
O	2.60.120.1320	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.2.0)
O	2.60.120.1310	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.2.0)
O	2.60.120.1330	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.2.0)
Q	2.60.120.1320	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.2.0)
Q	2.60.120.1310	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.2.0)
Q	2.60.120.1330	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.2.0)
A	2.60.120.1320	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.2.0)
A	2.60.120.1310	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.2.0)
A	2.60.120.1330	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.2.0)
B	2.60.120.1320	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.2.0)
B	2.60.120.1310	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.2.0)
B	2.60.120.1330	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.2.0)
C	2.60.120.1320	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.2.0)
C	2.60.120.1310	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.2.0)
C	2.60.120.1330	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.2.0)
D	2.60.120.1320	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.2.0)
D	2.60.120.1310	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.2.0)
D	2.60.120.1330	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.2.0)
E	2.60.120.1320	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.2.0)
E	2.60.120.1310	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.2.0)
E	2.60.120.1330	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.2.0)
F	2.60.120.1320	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.2.0)
F	2.60.120.1310	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.2.0)
F	2.60.120.1330	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.2.0)
G	2.60.120.1320	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.2.0)
G	2.60.120.1310	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.2.0)
G	2.60.120.1330	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.2.0)
H	2.60.120.1320	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.2.0)
H	2.60.120.1310	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.2.0)
H	2.60.120.1330	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.2.0)
J	2.60.120.1320	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.2.0)
J	2.60.120.1310	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.2.0)
J	2.60.120.1330	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.2.0)
K	2.60.120.1320	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.2.0)
K	2.60.120.1310	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.2.0)
K	2.60.120.1330	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.2.0)
L	2.60.120.1320	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.2.0)
L	2.60.120.1310	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.2.0)
L	2.60.120.1330	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.2.0)
M	2.60.120.1320	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.2.0)
M	2.60.120.1310	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.2.0)
M	2.60.120.1330	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.2.0)
P	2.60.120.1320	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.2.0)
P	2.60.120.1310	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.2.0)
P	2.60.120.1330	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.2.0)
R	2.60.120.1320	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.2.0)
R	2.60.120.1310	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.2.0)
R	2.60.120.1330	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.2.0)
S	2.60.120.1320	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.2.0)
S	2.60.120.1310	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.2.0)
S	2.60.120.1330	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.2.0)
T	2.60.120.1320	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.2.0)
T	2.60.120.1310	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.2.0)
T	2.60.120.1330	Mainly Beta	Sandwich	Jelly Rolls	CATH (4.2.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	PF21879	C381 turret protein Nucleoplasmin-like/VP domain (STIV_turret_3rd)	C381 turret protein Nucleoplasmin-like/VP domain	This entry represents the Sulfolobus turreted icosahedral virus (STIV) turret protein third jelly roll domain. The C381 turret protein is a component of the STIV virion vertex complex, which orchestrates virion assembly by coordinating interactions o ...	This entry represents the Sulfolobus turreted icosahedral virus (STIV) turret protein third jelly roll domain. The C381 turret protein is a component of the STIV virion vertex complex, which orchestrates virion assembly by coordinating interactions of the membrane and various protein components involved. The turret protein is apposed on the penton base C-terminal jelly-roll ring and forms a pentamer consisting of three consecutive layers of jelly-rolls, with each jelly-roll exhibiting different orientations. The interior of the C381 pentamer harbors two rather large cavities, which exhibit an overall positive electrostatic potential, suggesting that the turrets may act as STIV receptor-binding proteins carrying out recognition and attachment to the host receptors. The turret protein shares similarity with many carbohydrate-binding modules as well as domains involved in protein-protein interactions.	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	PF21878	C381 turret protein 1st galactose-binding domain-like (STIV_turret_1st)	C381 turret protein 1st galactose-binding domain-like	This entry represents the Sulfolobus turreted icosahedral virus (STIV) turret protein first jelly roll domain. The C381 turret protein is a component of the STIV virion vertex complex, which orchestrates virion assembly by coordinating interactions o ...	This entry represents the Sulfolobus turreted icosahedral virus (STIV) turret protein first jelly roll domain. The C381 turret protein is a component of the STIV virion vertex complex, which orchestrates virion assembly by coordinating interactions of the membrane and various protein components involved. The turret protein is apposed on the penton base C-terminal jelly-roll ring and forms a pentamer consisting of three consecutive layers of jelly-rolls, with each jelly-roll exhibiting different orientations. The interior of the C381 pentamer harbors two rather large cavities, which exhibit an overall positive electrostatic potential, suggesting that the turrets may act as STIV receptor-binding proteins carrying out recognition and attachment to the host receptors. The turret protein shares similarity with many carbohydrate-binding modules as well as domains involved in protein-protein interactions [1].	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	PF21876	C381 turret protein 2nd galactose-binding domain-like (STIV_turret_2nd)	C381 turret protein 2nd galactose-binding domain-like	This entry represents the Sulfolobus turreted icosahedral virus (STIV) turret protein second jelly roll domain. The C381 turret protein is a component of the STIV virion vertex complex, which orchestrates virion assembly by coordinating interactions ...	This entry represents the Sulfolobus turreted icosahedral virus (STIV) turret protein second jelly roll domain. The C381 turret protein is a component of the STIV virion vertex complex, which orchestrates virion assembly by coordinating interactions of the membrane and various protein components involved. The turret protein is apposed on the penton base C-terminal jelly-roll ring and forms a pentamer consisting of three consecutive layers of jelly-rolls, with each jelly-roll exhibiting different orientations. The interior of the C381 pentamer harbors two rather large cavities, which exhibit an overall positive electrostatic potential, suggesting that the turrets may act as STIV receptor-binding proteins carrying out recognition and attachment to the host receptors. The turret protein shares similarity with many carbohydrate-binding modules as well as domains involved in protein-protein interactions.	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.

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4IND

The Triple Jelly Roll Fold and Turret Assembly in an Archaeal Virus

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage