4QPL
Crystal structure of RNF146(RING-WWE)/UbcH5a/iso-ADPr complex
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | d4qplb1 | Alpha and beta proteins (a+b) | UBC-like | UBC-like | UBC-related | automated matches | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B | d4qplb2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
D | d4qpld1 | Alpha and beta proteins (a+b) | UBC-like | UBC-like | UBC-related | automated matches | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
D | d4qpld2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | WWE domain | 8042859 | 3001237 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | WWE domain | 8042859 | 3001237 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | UBC-like | 8059970 | 3000570 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | UBC-like | 8059970 | 3000570 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | WWE | e4qplA1 | A: beta barrels | X: WWE domain (From Topology) | H: WWE domain (From Topology) | T: WWE domain | F: WWE | ECOD (1.6) |
A | zf-C3HC4_3 | e4qplA2 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: zf-C3HC4_3 | ECOD (1.6) |
C | WWE | e4qplC1 | A: beta barrels | X: WWE domain (From Topology) | H: WWE domain (From Topology) | T: WWE domain | F: WWE | ECOD (1.6) |
C | zf-C3HC4_3 | e4qplC2 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: zf-C3HC4_3 | ECOD (1.6) |
B | UQ_con | e4qplB1 | A: a+b two layers | X: UBC-like | H: UBC-like (From Topology) | T: UBC-like | F: UQ_con | ECOD (1.6) |
D | UQ_con | e4qplD1 | A: a+b two layers | X: UBC-like | H: UBC-like (From Topology) | T: UBC-like | F: UQ_con | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.720.50 | Alpha Beta | 2-Layer Sandwich | Signal recognition particle alu RNA binding heterodimer, srp9/1 | CATH (utative) | |
C | 3.30.720.50 | Alpha Beta | 2-Layer Sandwich | Signal recognition particle alu RNA binding heterodimer, srp9/1 | CATH (utative) | |
B | 3.10.110.10 | Alpha Beta | Roll | Ubiquitin Conjugating Enzyme | Ubiquitin Conjugating Enzyme | CATH (4.3.0) |
D | 3.10.110.10 | Alpha Beta | Roll | Ubiquitin Conjugating Enzyme | Ubiquitin Conjugating Enzyme | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02825 | WWE domain (WWE) | WWE domain | - | Family | |
PF13920 | Zinc finger, C3HC4 type (RING finger) (zf-C3HC4_3) | Zinc finger, C3HC4 type (RING finger) | - | Domain | |
PF00179 | Ubiquitin-conjugating enzyme (UQ_con) | Ubiquitin-conjugating enzyme | Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cystein ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR033509 | E3 ubiquitin-protein ligase RNF146 | Family | |
IPR017907 | Zinc finger, RING-type, conserved site | Conserved Site | |
IPR013083 | Zinc finger, RING/FYVE/PHD-type | Homologous Superfamily | |
IPR004170 | WWE domain | Domain | |
IPR044110 | RNF146, RING finger, HC subclass | Domain | |
IPR037197 | WWE domain superfamily | Homologous Superfamily | |
IPR018123 | WWE domain, subgroup | Domain | |
IPR001841 | Zinc finger, RING-type | Domain | |
IPR000608 | Ubiquitin-conjugating enzyme E2 | Domain | |
IPR016135 | Ubiquitin-conjugating enzyme/RWD-like | Homologous Superfamily | |
IPR023313 | Ubiquitin-conjugating enzyme, active site | Active Site |