5DIS
Crystal structure of a CRM1-RanGTP-SPN1 export complex bound to a 113 amino acid FG-repeat containing fragment of Nup214
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | d5disb_ | Alpha and beta proteins (a/b) | P-loop containing nucleoside triphosphate hydrolases | P-loop containing nucleoside triphosphate hydrolases | G proteins | Ran | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
C | d5disc2 | Alpha and beta proteins (a+b) | ATP-grasp | DNA ligase/mRNA capping enzyme, catalytic domain | m3G-cap binding domain of snurportin-1 | automated matches | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
C | d5disc1 | Small proteins | Intrinsically disordered proteins | importin-beta binding (IBB) domain of snurportin-1 | automated matches | automated matches | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
C | d5disc3 | Artifacts | Tags | Tags | Tags | N-terminal Tags | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | ARM repeat-like | 8043363 | 3000116 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Ras-like P-loop GTPases | 8057412 | 3002022 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | DNA ligase/mRNA capping enzyme catalytic domain | 8102757 | 3000798 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Type 2 solute binding protein-like | 8058187 | 3000083 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF03810,PF08389,PF08767,PF18777,PF18784,PF18787 | e5disA1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF03810,PF08389,PF08767,PF18777,PF18784,PF18787 | ECOD (1.6) |
B | PF00071 | e5disB1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00071 | ECOD (1.6) |
C | PF21974 | e5disC1 | A: a+b complex topology | X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology) | H: Protein kinase/SAICAR synthase/ATP-grasp | T: ATP-grasp | F: PF21974 | ECOD (1.6) |
C | PF11538 | e5disC2 | A: extended segments | X: IBB domain (From Topology) | H: IBB domain (From Topology) | T: IBB domain | F: PF11538 | ECOD (1.6) |
D | PF01547 | e5disD1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: PF01547 | ECOD (1.6) |
D | PF18617 | e5disD3 | A: few secondary structure elements | X: Hormone receptor domain (HRM, Pfam 02793) (From Topology) | H: Hormone receptor domain (HRM, Pfam 02793) (From Topology) | T: Hormone receptor domain (HRM, Pfam 02793) | F: PF18617 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
C | 3.30.470.30 | Alpha Beta | 2-Layer Sandwich | D-amino Acid Aminotransferase | Chain A, domain 1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF08389 | Exportin 1-like protein (Xpo1) | Exportin 1-like protein | - | Repeat | |
PF18784 | CRM1 / Exportin repeat 2 (CRM1_repeat_2) | CRM1 / Exportin repeat 2 | - | Repeat | |
PF18777 | Chromosome region maintenance or exportin repeat (CRM1_repeat) | Chromosome region maintenance or exportin repeat | - | Repeat | |
PF18787 | CRM1 / Exportin repeat 3 (CRM1_repeat_3) | CRM1 / Exportin repeat 3 | - | Repeat | |
PF03810 | Importin-beta N-terminal domain (IBN_N) | Importin-beta N-terminal domain | - | Repeat | |
PF08767 | CRM1 C terminal (CRM1_C) | CRM1 C terminal | - | Repeat | |
PF00071 | Ras family (Ras) | Ras family | Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See Pfam:PF00009 Pfam:PF00025, Pfam:PF00063. As regards Rab GTPases, these are important regulators of vesicle formation, motil ... | Domain | |
PF11538 | Snurportin1 (Snurportin1) | Snurportin1 | - | Family | |
PF01547 | Bacterial extracellular solute-binding protein (SBP_bac_1) | Bacterial extracellular solute-binding protein | - | Family | |
PF18617 | Nucleoporin Nup214 phenylalanine-glycine (FG) domain (Nup214_FG) | Nucleoporin Nup214 phenylalanine-glycine (FG) domain | CRM1 is the major nuclear export receptor. During translocation through the nuclear pore, transport complexes transiently interact with phenylalanine-glycine (FG) repeats of multiple nucleoporins. On the cytoplasmic side of the nuclear pore, CRM1 tig ... | Domain |