5G05 | pdb_00005g05

Cryo-EM structure of combined apo phosphorylated APC


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyRING/U-box like 8082719 3000160 SCOP2B (2022-06-29)
R [auth W]SCOP2B SuperfamilyCDC26-like 8053843 3002235 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyCDC26-like 8053843 3002235 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyWD40 repeat-like 8106386 3001694 SCOP2B (2022-06-29)
LSCOP2B Superfamilygalactose-binding domain-like 8037020 3000087 SCOP2B (2022-06-29)
MSCOP2 FamilyAnaphase-promoting complex subunit 13 8047611 4005717 SCOP2 (2022-06-29)
MSCOP2 SuperfamilyAnaphase-promoting complex subunit 13 8093173 3002688 SCOP2 (2022-06-29)
CSCOP2B SuperfamilyTPR-like 8057064 3001345 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyTPR-like 8057064 3001345 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyAnaphase-promoting complex subunit 16-like 8053719 3002218 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AKOG1858_3rde5g05A5 A: beta sandwichesX: 26S proteasome subunit Rpn2 C-terminal domain (From Topology)H: 26S proteasome subunit Rpn2 C-terminal domain (From Topology)T: 26S proteasome subunit Rpn2 C-terminal domainF: KOG1858_3rdECOD (1.6)
AANAPC1e5g05A3 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC1ECOD (1.6)
AKOG1858_2nde5g05A1 A: alpha superhelicesX: Repetitive alpha hairpinsH: Proteasome/cyclosome (PC) repeat (From Topology)T: Proteasome/cyclosome (PC) repeatF: KOG1858_2ndECOD (1.6)
AKOG1858_1ste5g05A2 A: alpha superhelicesX: Repetitive alpha hairpinsH: Anaphase-promoting complex subunit 1 first helical domain (From Topology)T: Anaphase-promoting complex subunit 1 first helical domainF: KOG1858_1stECOD (1.6)
AKOG1858_4the5g05A4 A: alpha superhelicesX: Repetitive alpha hairpinsH: Anaphase-promoting complex subunit 1 second helical domain (From Topology)T: Anaphase-promoting complex subunit 1 second helical domainF: KOG1858_4thECOD (1.6)
Bzf-rbx1e5g05B1 A: few secondary structure elementsX: RING/U-box-likeH: RING/U-box-likeT: RING/U-boxF: zf-rbx1ECOD (1.6)
HTPR_11_7e5g05H1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: TPR_11_7ECOD (1.6)
FTPR_11_7e5g05F1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: TPR_11_7ECOD (1.6)
IANAPC4_WD40e5g05I2 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40ECOD (1.6)
IANAPC4e5g05I1 A: alpha bundlesX: Four-helical up-and-down bundleH: Helical bundle domain in anaphase-promoting complex subunit 4 (From Topology)T: Helical bundle domain in anaphase-promoting complex subunit 4F: ANAPC4ECOD (1.6)
JTPR_11_7e5g05J1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: TPR_11_7ECOD (1.6)
KTPR_11_7e5g05K1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: TPR_11_7ECOD (1.6)
LANAPC10e5g05L1 A: beta sandwichesX: jelly-rollH: Concanavalin A-likeT: Galactose-binding domain-likeF: ANAPC10ECOD (1.6)
NCullin_4the5g05N3 A: alpha arraysX: HTHH: HTHT: wingedF: Cullin_4thECOD (1.6)
NCullin_2nde5g05N4 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: Cullin_2ndECOD (1.6)
NKOG2165e5g05N2 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: KOG2165ECOD (1.6)
NCullin_3rde5g05N1 A: a+b duplicates or obligate multimersX: a+b domain in cullin-like proteins (From Topology)H: a+b domain in cullin-like proteins (From Topology)T: a+b domain in cullin-like proteinsF: Cullin_3rdECOD (1.6)
OApc5_Ne5g05O2 A: alpha arraysX: SHQ1 C-terminal domain-likeH: Anaphase-promoting complex subunit 5 N-terminal domain (From Topology)T: Anaphase-promoting complex subunit 5 N-terminal domainF: Apc5_NECOD (1.6)
OANAPC5e5g05O1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: ANAPC5ECOD (1.6)
S [auth X]TPR_19,ANAPC8e5g05X1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: TPR_19,ANAPC8ECOD (1.6)
T [auth Y]TPR_11_9e5g05Y1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: TPR_11_9ECOD (1.6)
CKOG1155e5g05C2 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: KOG1155ECOD (1.6)
CANAPC8e5g05C1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: ANAPC8ECOD (1.6)
PKOG1155e5g05P3 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: KOG1155ECOD (1.6)
PANAPC8e5g05P2 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: ANAPC8ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF20518Anaphase-promoting complex subunit 1 middle domain (Apc1_MidN)Anaphase-promoting complex subunit 1 middle domain- Repeat
PF18122Anaphase-promoting complex sub unit 1 C-terminal domain (APC1_C)Anaphase-promoting complex sub unit 1 C-terminal domainThis is the C-terminal domain of chain A, also known as sub-unit 1, found in anaphase-promoting complex (APC/C) present in Homo sapiens. APC/C is an ubiquitin ligase that controls chromosome segregation and mitotic exit [1]. Domain
PF21282APC1 beta sandwich domain (APC1_3rd)APC1 beta sandwich domainThis domain is found close to the C-terminus of the APC1 protein which is a component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the ce ...Domain
PF12861Anaphase-promoting complex subunit 11 RING-H2 finger (zf-ANAPC11)Anaphase-promoting complex subunit 11 RING-H2 fingerApc11 is one of the subunits of the anaphase-promoting complex or cyclosome [1]. The APC subunits are cullin family proteins with ubiquitin ligase activity [2]. Polyubiquitination marks proteins for degradation by the 26S proteasome and is carried ou ...Domain
F, H
PF12895Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3)Anaphase-promoting complex, cyclosome, subunit 3- Repeat
F, H
PF00515Tetratricopeptide repeat (TPR_1)Tetratricopeptide repeat- Repeat
G,
R [auth W]
PF10471Anaphase-promoting complex APC subunit CDC26 (ANAPC_CDC26)Anaphase-promoting complex APC subunit CDC26- Family
PF12896Anaphase-promoting complex, cyclosome, subunit 4 (ANAPC4)Anaphase-promoting complex, cyclosome, subunit 4Apc4 is one of the larger of the subunits of the anaphase-promoting complex or cyclosome. This family represents the long domain downstream of the WD40 repeat/s that are present on the Apc4 subunits. The anaphase-promoting complex is a multiprotein s ...Domain
PF12894Anaphase-promoting complex subunit 4 WD40 domain (ANAPC4_WD40)Anaphase-promoting complex subunit 4 WD40 domain- Repeat
J, K
PF12895Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3)Anaphase-promoting complex, cyclosome, subunit 3- Repeat
J, K
PF13424Tetratricopeptide repeat (TPR_12)Tetratricopeptide repeat- Repeat
PF03256Anaphase-promoting complex, subunit 10 (APC10) (ANAPC10)Anaphase-promoting complex, subunit 10 (APC10)- Family
PF05839Apc13p protein (Apc13p)Apc13p protein- Family
PF12862Anaphase-promoting complex subunit 5 (ANAPC5)Anaphase-promoting complex subunit 5- Repeat
PF21371Anaphase-promoting complex subunit 5, N-terminal domain (Apc5_N)Anaphase-promoting complex subunit 5, N-terminal domainThis domain is found at the N-terminal end of Anaphase-promoting complex subunit 5 from humans (Apc5), a component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitos ...Domain
S [auth X],
T [auth Y]
PF13181Tetratricopeptide repeat (TPR_8)Tetratricopeptide repeat- Repeat
S [auth X],
T [auth Y]
PF13432Tetratricopeptide repeat (TPR_16)Tetratricopeptide repeat- Repeat
C, P
PF04049Anaphase promoting complex subunit 8 / Cdc23 (ANAPC8)Anaphase promoting complex subunit 8 / Cdc23- Repeat
PF15243Anaphase-promoting complex subunit 15 (ANAPC15)Anaphase-promoting complex subunit 15- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
ANAPHASE-PROMOTING COMPLEX SUBUNIT 1
ANAPHASE-PROMOTING COMPLEX SUBUNIT 11
F, H
CELL DIVISION CYCLE PROTEIN 27 HOMOLOG
G,
R [auth W]
ANAPHASE-PROMOTING COMPLEX SUBUNIT CDC26-
ANAPHASE-PROMOTING COMPLEX SUBUNIT 4
J, K
CELL DIVISION CYCLE PROTEIN 16 HOMOLOG-
ANAPHASE-PROMOTING COMPLEX SUBUNIT 10-
ANAPHASE-PROMOTING COMPLEX SUBUNIT 13-
ANAPHASE-PROMOTING COMPLEX SUBUNIT 2
ANAPHASE-PROMOTING COMPLEX SUBUNIT 5
S [auth X],
T [auth Y]
ANAPHASE-PROMOTING COMPLEX SUBUNIT 7
Q [auth T]UNIDENTIFIED PEPTIDE---
C, P
CELL DIVISION CYCLE PROTEIN 23 HOMOLOG
ANAPHASE-PROMOTING COMPLEX SUBUNIT 15-
ANAPHASE-PROMOTING COMPLEX SUBUNIT 16-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR041221Anaphase-promoting complex subunit 1, C-terminalDomain
IPR046794Anaphase-promoting complex subunit 1, middle domainDomain
IPR024990Anaphase-promoting complex subunit 1Family
IPR048971Anaphase-promoting complex subunit 1, beta-sandwich domainDomain
IPR049255Anaphase-promoting complex subunit 1, N-terminal domainDomain
IPR011989Armadillo-like helicalHomologous Superfamily
IPR051031RING-box E3 Ubiquitin LigaseFamily
IPR013083Zinc finger, RING/FYVE/PHD-typeHomologous Superfamily
IPR024991Anaphase-promoting complex subunit 11, RING-H2 fingerDomain
IPR001841Zinc finger, RING-typeDomain
F, H
IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
F, H
IPR019734Tetratricopeptide repeatRepeat
G,
R [auth W]
IPR018860Anaphase-promoting complex, subunit CDC26Family
IPR017169Anaphase-promoting complex subunit 4, metazoaFamily
IPR024977Anaphase-promoting complex subunit 4-like, WD40 domainDomain
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
IPR024789Anaphase-promoting complex subunit 4Family
IPR024790Anaphase-promoting complex subunit 4, long domainDomain
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
J, K
IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
J, K
IPR019734Tetratricopeptide repeatRepeat
IPR016901Anaphase-promoting complex subunit APC10/Doc1Family
IPR008979Galactose-binding-like domain superfamilyHomologous Superfamily
IPR004939APC10/DOC domainDomain
IPR008401Apc13Family
IPR014786Anaphase-promoting complex subunit 2, C-terminalDomain
IPR016158Cullin homology domainDomain
IPR001373Cullin, N-terminalDomain
IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
IPR036317Cullin homology domain superfamilyHomologous Superfamily
IPR044554Anaphase-promoting complex subunit 2Family
IPR026000Anaphase-promoting complex subunit 5 domainDomain
IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
IPR037679Anaphase-promoting complex subunit 5Family
IPR019734Tetratricopeptide repeatRepeat
IPR048968Anaphase-promoting complex subunit 5, N-terminal domainDomain
S [auth X],
T [auth Y]
IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
S [auth X],
T [auth Y]
IPR019734Tetratricopeptide repeatRepeat
C, P
IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
C, P
IPR007192Cdc23Domain
C, P
IPR019734Tetratricopeptide repeatRepeat
IPR026182Anaphase-promoting complex subunit 15Family
IPR029641Anaphase-promoting complex subunit 16Family

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
PharosQ9H1A4
PharosQ9NYG5
F, H
PharosP30260
G,
R [auth W]
PharosQ8NHZ8
PharosQ9UJX5
J, K
PharosQ13042
PharosQ9UM13
PharosQ9UJX6
PharosQ9UJX4
S [auth X],
T [auth Y]
PharosQ9UJX3
C, P
PharosQ9UJX2
PharosP60006
PharosQ96DE5