Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad5h2fa_ Membrane and cell surface proteins and peptides Bacterial photosystem II reaction centre, L and M subunits Bacterial photosystem II reaction centre, L and M subunits Bacterial photosystem II reaction centre, L and M subunits Photosystem Q(B) protein 1, PsbA1 (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
Bd5h2fb_ Membrane and cell surface proteins and peptides Photosystem II antenna protein-like Photosystem II antenna protein-like Photosystem II antenna protein-like automated matches (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
Fd5h2ff_ Membrane and cell surface proteins and peptides Single transmembrane helix Cytochrome b559 subunits Cytochrome b559 subunits automated matches (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
G [auth H]d5h2fh_ Membrane and cell surface proteins and peptides Single transmembrane helix Photosystem II 10 kDa phosphoprotein PsbH PsbH-like Photosystem II reaction center protein H, PsbH (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
J [auth K]d5h2fk_ Membrane and cell surface proteins and peptides Single transmembrane helix Photosystem II reaction center protein K, PsbK PsbK-like Photosystem II reaction center protein K, PsbK (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
K [auth L]d5h2fl_ Membrane and cell surface proteins and peptides Single transmembrane helix Photosystem II reaction center protein L, PsbL PsbL-like automated matches (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
R [auth Z]d5h2fz_ Membrane and cell surface proteins and peptides Transmembrane helix hairpin PsbZ-like PsbZ-like Photosystem II reaction center protein Z, PsbZ (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
L [auth O]d5h2fo_ Membrane and cell surface proteins and peptides Transmembrane beta-barrels OMPA-like PsbO-like Manganese-stabilising protein, PsbO (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
M [auth T]d5h2ft_ Membrane and cell surface proteins and peptides Single transmembrane helix Photosystem II reaction center protein T, PsbT PsbT-like Photosystem II reaction center protein T, PsbT (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
FA [auth u]d5h2fu_ All alpha proteins SAM domain-like PsbU/PolX domain-like PsbU-like Photosystem II 12 kDa extrinsic protein PsbU (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
O [auth V]d5h2fv_ All alpha proteins Cytochrome c Cytochrome c monodomain cytochrome c Cytochrome c550 (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
Q [auth X]d5h2fx_ Membrane and cell surface proteins and peptides Single transmembrane helix Photosystem II reaction center protein X, PsbX PsbX-like automated matches (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
Cd5h2fc_ Membrane and cell surface proteins and peptides Photosystem II antenna protein-like Photosystem II antenna protein-like Photosystem II antenna protein-like automated matches (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
Dd5h2fd_ Membrane and cell surface proteins and peptides Bacterial photosystem II reaction centre, L and M subunits Bacterial photosystem II reaction centre, L and M subunits Bacterial photosystem II reaction centre, L and M subunits automated matches (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
Ed5h2fe_ Membrane and cell surface proteins and peptides Single transmembrane helix Cytochrome b559 subunits Cytochrome b559 subunits Cytochrome b559 subunit alpha, PsbE (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)
I [auth J]d5h2fj_ Membrane and cell surface proteins and peptides Single transmembrane helix Photosystem II reaction center protein J, PsbJ PsbJ-like Photosystem II reaction center protein J, PsbJ (Thermosynechococcus vestitus BP-1 ) [TaxId: 197221 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8032741 3000736 SCOP2B (2022-06-29)
S [auth a]SCOP2B SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8032741 3000736 SCOP2B (2022-06-29)
T [auth b]SCOP2B SuperfamilyPhotosystem II antenna protein-like 8032743 3001674 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyPhotosystem II antenna protein-like 8032743 3001674 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyCytochrome b559 subunits 8032752 3001602 SCOP2B (2022-06-29)
X [auth f]SCOP2B SuperfamilyCytochrome b559 subunits 8032752 3001602 SCOP2B (2022-06-29)
G [auth H]SCOP2B SuperfamilyPhotosystem II 10 kDa phosphoprotein PsbH 8032753 3001547 SCOP2B (2022-06-29)
Y [auth h]SCOP2B SuperfamilyPhotosystem II 10 kDa phosphoprotein PsbH 8032753 3001547 SCOP2B (2022-06-29)
BA [auth k]SCOP2B SuperfamilyPhotosystem II reaction center protein K, PsbK 8032757 3001585 SCOP2B (2022-06-29)
J [auth K]SCOP2B SuperfamilyPhotosystem II reaction center protein K, PsbK 8032757 3001585 SCOP2B (2022-06-29)
CA [auth l]SCOP2B SuperfamilyPhotosystem II reaction center protein L, PsbL 8032759 3001523 SCOP2B (2022-06-29)
K [auth L]SCOP2B SuperfamilyPhotosystem II reaction center protein L, PsbL 8032759 3001523 SCOP2B (2022-06-29)
JA [auth z]SCOP2B SuperfamilyPsbZ-like 8032770 3001624 SCOP2B (2022-06-29)
R [auth Z]SCOP2B SuperfamilyPsbZ-like 8032770 3001624 SCOP2B (2022-06-29)
DA [auth o]SCOP2B SuperfamilyOMPA barrel-like 8032765 3000208 SCOP2B (2022-06-29)
L [auth O]SCOP2B SuperfamilyOMPA barrel-like 8032765 3000208 SCOP2B (2022-06-29)
EA [auth t]SCOP2B SuperfamilyPhotosystem II reaction center protein T, PsbT 8032769 3001561 SCOP2B (2022-06-29)
M [auth T]SCOP2B SuperfamilyPhotosystem II reaction center protein T, PsbT 8032769 3001561 SCOP2B (2022-06-29)
FA [auth u]SCOP2B SuperfamilyPsbU/PolX domain-like 8032768 3000893 SCOP2B (2022-06-29)
N [auth U]SCOP2B SuperfamilyPsbU/PolX domain-like 8032768 3000893 SCOP2B (2022-06-29)
GA [auth v]SCOP2B SuperfamilyCytochrome c 8036565 3000815 SCOP2B (2022-06-29)
O [auth V]SCOP2B SuperfamilyCytochrome c 8036565 3000815 SCOP2B (2022-06-29)
HA [auth y]SCOP2B SuperfamilyPhotosystem II reaction center protein Ycf12 8093136 3002680 SCOP2B (2022-06-29)
P [auth Y]SCOP2B SuperfamilyPhotosystem II reaction center protein Ycf12 8093136 3002680 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyPhotosystem II antenna protein-like 8032746 3001674 SCOP2B (2022-06-29)
U [auth c]SCOP2B SuperfamilyPhotosystem II antenna protein-like 8032746 3001674 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8032750 3000736 SCOP2B (2022-06-29)
V [auth d]SCOP2B SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8032750 3000736 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyCytochrome b559 subunits 8032749 3001602 SCOP2B (2022-06-29)
W [auth e]SCOP2B SuperfamilyCytochrome b559 subunits 8032749 3001602 SCOP2B (2022-06-29)
H [auth I]SCOP2B SuperfamilyPhotosystem II reaction center protein I, PsbI 8032754 3001590 SCOP2B (2022-06-29)
Z [auth i]SCOP2B SuperfamilyPhotosystem II reaction center protein I, PsbI 8032754 3001590 SCOP2B (2022-06-29)
AA [auth j]SCOP2B SuperfamilyPhotosystem II reaction center protein J, PsbJ 8032755 3001534 SCOP2B (2022-06-29)
I [auth J]SCOP2B SuperfamilyPhotosystem II reaction center protein J, PsbJ 8032755 3001534 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APhoto_RCe5h2fA1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: Photo_RCECOD (1.6)
S [auth a]Photo_RCe5h2fa1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: Photo_RCECOD (1.6)
T [auth b]PSII_1ste5h2fb1 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PSII_1stECOD (1.6)
T [auth b]PSII_2nde5h2fb2 A: a+b two layersX: Photosystem II antenna protein PsbB insertion domain (From Topology)H: Photosystem II antenna protein PsbB insertion domain (From Topology)T: Photosystem II antenna protein PsbB insertion domainF: PSII_2ndECOD (1.6)
BPSII_1ste5h2fB1 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PSII_1stECOD (1.6)
BPSII_2nde5h2fB2 A: a+b two layersX: Photosystem II antenna protein PsbB insertion domain (From Topology)H: Photosystem II antenna protein PsbB insertion domain (From Topology)T: Photosystem II antenna protein PsbB insertion domainF: PSII_2ndECOD (1.6)
FCytochrom_B559e5h2fF1 A: extended segmentsX: Cytochrome b559 subunits (From Topology)H: Cytochrome b559 subunits (From Topology)T: Cytochrome b559 subunitsF: Cytochrom_B559ECOD (1.6)
X [auth f]Cytochrom_B559e5h2ff1 A: extended segmentsX: Cytochrome b559 subunits (From Topology)H: Cytochrome b559 subunits (From Topology)T: Cytochrome b559 subunitsF: Cytochrom_B559ECOD (1.6)
G [auth H]PsbHe5h2fH1 A: extended segmentsX: Photosystem II 10 kDa phosphoprotein PsbH (From Topology)H: Photosystem II 10 kDa phosphoprotein PsbH (From Topology)T: Photosystem II 10 kDa phosphoprotein PsbHF: PsbHECOD (1.6)
Y [auth h]PsbHe5h2fh1 A: extended segmentsX: Photosystem II 10 kDa phosphoprotein PsbH (From Topology)H: Photosystem II 10 kDa phosphoprotein PsbH (From Topology)T: Photosystem II 10 kDa phosphoprotein PsbHF: PsbHECOD (1.6)
BA [auth k]PsbKe5h2fk1 A: extended segmentsX: Photosystem II reaction center protein K, PsbK (From Topology)H: Photosystem II reaction center protein K, PsbK (From Topology)T: Photosystem II reaction center protein K, PsbKF: PsbKECOD (1.6)
J [auth K]PsbKe5h2fK1 A: extended segmentsX: Photosystem II reaction center protein K, PsbK (From Topology)H: Photosystem II reaction center protein K, PsbK (From Topology)T: Photosystem II reaction center protein K, PsbKF: PsbKECOD (1.6)
CA [auth l]PsbLe5h2fl1 A: extended segmentsX: Photosystem II reaction center protein L, PsbL (From Topology)H: Photosystem II reaction center protein L, PsbL (From Topology)T: Photosystem II reaction center protein L, PsbLF: PsbLECOD (1.6)
K [auth L]PsbLe5h2fL1 A: extended segmentsX: Photosystem II reaction center protein L, PsbL (From Topology)H: Photosystem II reaction center protein L, PsbL (From Topology)T: Photosystem II reaction center protein L, PsbLF: PsbLECOD (1.6)
JA [auth z]Ycf9e5h2fz1 A: extended segmentsX: PsbZ-like (From Topology)H: PsbZ-like (From Topology)T: PsbZ-likeF: Ycf9ECOD (1.6)
R [auth Z]Ycf9e5h2fZ1 A: extended segmentsX: PsbZ-like (From Topology)H: PsbZ-like (From Topology)T: PsbZ-likeF: Ycf9ECOD (1.6)
DA [auth o]MSPe5h2fo1 A: beta barrelsX: Outer membrane meander beta-barrelsH: OMPA-like (From Topology)T: OMPA-likeF: MSPECOD (1.6)
L [auth O]MSPe5h2fO1 A: beta barrelsX: Outer membrane meander beta-barrelsH: OMPA-like (From Topology)T: OMPA-likeF: MSPECOD (1.6)
EA [auth t]PsbTe5h2ft1 A: extended segmentsX: Photosystem II reaction center protein T, PsbT (From Topology)H: Photosystem II reaction center protein T, PsbT (From Topology)T: Photosystem II reaction center protein T, PsbTF: PsbTECOD (1.6)
M [auth T]PsbTe5h2fT1 A: extended segmentsX: Photosystem II reaction center protein T, PsbT (From Topology)H: Photosystem II reaction center protein T, PsbT (From Topology)T: Photosystem II reaction center protein T, PsbTF: PsbTECOD (1.6)
FA [auth u]PsbUe5h2fu1 A: alpha arraysX: HhH/H2THH: SAM/DNA-glycosylaseT: SAM domain-likeF: PsbUECOD (1.6)
N [auth U]PsbUe5h2fU1 A: alpha arraysX: HhH/H2THH: SAM/DNA-glycosylaseT: SAM domain-likeF: PsbUECOD (1.6)
GA [auth v]Cytochrom_C550e5h2fv1 A: alpha arraysX: Cytochrome c-likeH: Cytochrome c (From Topology)T: Cytochrome cF: Cytochrom_C550ECOD (1.6)
O [auth V]Cytochrom_C550e5h2fV1 A: alpha arraysX: Cytochrome c-likeH: Cytochrome c (From Topology)T: Cytochrome cF: Cytochrom_C550ECOD (1.6)
HA [auth y]PSII_Ycf12e5h2fy1 A: extended segmentsX: Photosystem II reaction center protein ycf12 (From Topology)H: Photosystem II reaction center protein ycf12 (From Topology)T: Photosystem II reaction center protein ycf12F: PSII_Ycf12ECOD (1.6)
P [auth Y]PSII_Ycf12e5h2fY1 A: extended segmentsX: Photosystem II reaction center protein ycf12 (From Topology)H: Photosystem II reaction center protein ycf12 (From Topology)T: Photosystem II reaction center protein ycf12F: PSII_Ycf12ECOD (1.6)
IA [auth x]PsbXe5h2fx1 A: extended segmentsX: Photosystem II PsbX protein (From Topology)H: Photosystem II PsbX protein (From Topology)T: Photosystem II PsbX proteinF: PsbXECOD (1.6)
Q [auth X]PsbXe5h2fX1 A: extended segmentsX: Photosystem II PsbX protein (From Topology)H: Photosystem II PsbX protein (From Topology)T: Photosystem II PsbX proteinF: PsbXECOD (1.6)
CPSII_1ste5h2fC1 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PSII_1stECOD (1.6)
U [auth c]PSII_1ste5h2fc1 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PSII_1stECOD (1.6)
DPhoto_RCe5h2fD1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: Photo_RCECOD (1.6)
V [auth d]Photo_RCe5h2fd1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: Photo_RCECOD (1.6)
ECytochrom_B559ae5h2fE1 A: extended segmentsX: Cytochrome b559 subunits (From Topology)H: Cytochrome b559 subunits (From Topology)T: Cytochrome b559 subunitsF: Cytochrom_B559aECOD (1.6)
W [auth e]Cytochrom_B559ae5h2fe1 A: extended segmentsX: Cytochrome b559 subunits (From Topology)H: Cytochrome b559 subunits (From Topology)T: Cytochrome b559 subunitsF: Cytochrom_B559aECOD (1.6)
H [auth I]PsbIe5h2fI1 A: extended segmentsX: Photosystem II reaction center protein I, PsbI (From Topology)H: Photosystem II reaction center protein I, PsbI (From Topology)T: Photosystem II reaction center protein I, PsbIF: PsbIECOD (1.6)
Z [auth i]PsbIe5h2fi1 A: extended segmentsX: Photosystem II reaction center protein I, PsbI (From Topology)H: Photosystem II reaction center protein I, PsbI (From Topology)T: Photosystem II reaction center protein I, PsbIF: PsbIECOD (1.6)
AA [auth j]PsbJe5h2fj1 A: extended segmentsX: Photosystem II reaction center protein J, PsbJ (From Topology)H: Photosystem II reaction center protein J, PsbJ (From Topology)T: Photosystem II reaction center protein J, PsbJF: PsbJECOD (1.6)
I [auth J]PsbJe5h2fJ1 A: extended segmentsX: Photosystem II reaction center protein J, PsbJ (From Topology)H: Photosystem II reaction center protein J, PsbJ (From Topology)T: Photosystem II reaction center protein J, PsbJF: PsbJECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
T [auth b]3.10.680.10 Alpha Beta Roll Photosystem II CP47 reaction center protein Photosystem II CP47 reaction center proteinCATH (4.3.0)
B3.10.680.10 Alpha Beta Roll Photosystem II CP47 reaction center protein Photosystem II CP47 reaction center proteinCATH (4.3.0)
G [auth H]1.20.5.880 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Photosystem II reaction center protein HCATH (4.3.0)
Y [auth h]1.20.5.880 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Photosystem II reaction center protein HCATH (4.3.0)
JA [auth z]1.10.287.740 Mainly Alpha Orthogonal Bundle Helix Hairpins Photosystem II PsbZ, reaction centreCATH (4.3.0)
R [auth Z]1.10.287.740 Mainly Alpha Orthogonal Bundle Helix Hairpins Photosystem II PsbZ, reaction centreCATH (4.3.0)
DA [auth o]2.40.160.30 Mainly Beta Beta Barrel Porin Photosystem II, cytochrome c-550 precursorCATH (4.3.0)
DA [auth o]3.30.2050.10 Alpha Beta 2-Layer Sandwich photosynthetic oxygen evolving center fold photosynthetic oxygen evolving center domainCATH (4.3.0)
L [auth O]2.40.160.30 Mainly Beta Beta Barrel Porin Photosystem II, cytochrome c-550 precursorCATH (4.3.0)
L [auth O]3.30.2050.10 Alpha Beta 2-Layer Sandwich photosynthetic oxygen evolving center fold photosynthetic oxygen evolving center domainCATH (4.3.0)
FA [auth u]1.10.150.320 Mainly Alpha Orthogonal Bundle DNA polymerase domain 1CATH (4.3.0)
N [auth U]1.10.150.320 Mainly Alpha Orthogonal Bundle DNA polymerase domain 1CATH (4.3.0)
GA [auth v]1.10.760.10 Mainly Alpha Orthogonal Bundle Cytochrome Bc1 Complex Chain D, domain 2CATH (4.3.0)
O [auth V]1.10.760.10 Mainly Alpha Orthogonal Bundle Cytochrome Bc1 Complex Chain D, domain 2CATH (4.3.0)
C1.10.10.670 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A photosystem ii from thermosynechococcus elongatusCATH (4.3.0)
U [auth c]1.10.10.670 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A photosystem ii from thermosynechococcus elongatusCATH (4.3.0)
E1.20.5.860 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Photosystem II cytochrome b559, alpha subunitCATH (4.3.0)
W [auth e]1.20.5.860 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Photosystem II cytochrome b559, alpha subunitCATH (4.3.0)
AA [auth j]6.10.250.2070 Special Helix non-globular Single alpha-helices involved in coiled-coils or other helix-helix interfaces CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A,
S [auth a]
PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
B,
T [auth b]
PF00421Photosystem II protein (PSII)Photosystem II protein- Family
F,
X [auth f]
PF00283Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits (Cytochrom_B559)Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits- Family
G [auth H],
Y [auth h]
PF00737Photosystem II 10 kDa phosphoprotein (PsbH)Photosystem II 10 kDa phosphoprotein- Family
BA [auth k],
J [auth K]
PF02533Photosystem II 4 kDa reaction centre component (PsbK)Photosystem II 4 kDa reaction centre component- Family
CA [auth l],
K [auth L]
PF02419PsbL protein (PsbL)PsbL protein- Family
JA [auth z],
R [auth Z]
PF01737YCF9 (Ycf9)YCF9- Family
DA [auth o],
L [auth O]
PF01716Manganese-stabilising protein / photosystem II polypeptide (MSP)Manganese-stabilising protein / photosystem II polypeptide- Family
EA [auth t],
M [auth T]
PF01405Photosystem II reaction centre T protein (PsbT)Photosystem II reaction centre T protein- Family
FA [auth u],
N [auth U]
PF06514Photosystem II 12 kDa extrinsic protein (PsbU) (PsbU)Photosystem II 12 kDa extrinsic protein (PsbU)- Family
GA [auth v],
O [auth V]
PF14495Cytochrome c-550 domain (Cytochrom_C550)Cytochrome c-550 domainThis domain is a heme binding cytochrome known as cytochrome c550, or cytochrome c549, or PsbV [1]. Domain
HA [auth y],
P [auth Y]
PF05969Photosystem II complex subunit Ycf12 (PSII_Ycf12)Photosystem II complex subunit Ycf12- Family
IA [auth x],
Q [auth X]
PF06596Photosystem II reaction centre X protein (PsbX) (PsbX)Photosystem II reaction centre X protein (PsbX)- Family
C,
U [auth c]
PF00421Photosystem II protein (PSII)Photosystem II protein- Family
D,
V [auth d]
PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
E,
W [auth e]
PF00283Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits (Cytochrom_B559)Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits- Family
E,
W [auth e]
PF00284Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit (Cytochrom_B559a)Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit- Family
H [auth I],
Z [auth i]
PF02532Photosystem II reaction centre I protein (PSII 4.8 kDa protein) (PsbI)Photosystem II reaction centre I protein (PSII 4.8 kDa protein)- Family
AA [auth j],
I [auth J]
PF01788PsbJ (PsbJ)PsbJ- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A,
S [auth a]
Photosystem II protein D1 1
B,
T [auth b]
Photosystem II CP47 reaction center protein
F,
X [auth f]
Cytochrome b559 subunit beta
G [auth H],
Y [auth h]
Photosystem II reaction center protein H
BA [auth k],
J [auth K]
Photosystem II reaction center protein K-
CA [auth l],
K [auth L]
Photosystem II reaction center protein L-
JA [auth z],
R [auth Z]
Photosystem II reaction center protein Z-
DA [auth o],
L [auth O]
Photosystem II manganese-stabilizing polypeptide
EA [auth t],
M [auth T]
Photosystem II reaction center protein T-
FA [auth u],
N [auth U]
Photosystem II 12 kDa extrinsic protein-
GA [auth v],
O [auth V]
Cytochrome c-550
HA [auth y],
P [auth Y]
Photosystem II reaction center protein Ycf12-
IA [auth x],
Q [auth X]
Photosystem II reaction center X protein-
C,
U [auth c]
Photosystem II CP43 reaction center protein
D,
V [auth d]
Photosystem II D2 protein
E,
W [auth e]
Cytochrome b559 subunit alpha
H [auth I],
Z [auth i]
Photosystem II reaction center protein I-
AA [auth j],
I [auth J]
Photosystem II reaction center protein J-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A,
S [auth a]
IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
A,
S [auth a]
IPR005867Photosystem II protein D1Family
A,
S [auth a]
IPR000484Photosynthetic reaction centre, L/MFamily
A,
S [auth a]
IPR055265Photosynthetic reaction centre, L/M, conserved siteConserved Site
A,
S [auth a]
IPR055266Photosystem II protein D1/D2Family
B,
T [auth b]
IPR036001Photosystem antenna protein-like superfamilyHomologous Superfamily
B,
T [auth b]
IPR000932Photosystem antenna protein-likeFamily
B,
T [auth b]
IPR017486Photosystem II CP47 reaction centre proteinFamily
F,
X [auth f]
IPR006241Photosystem II cytochrome b559, beta subunitFamily
F,
X [auth f]
IPR013081Photosystem II cytochrome b559, N-terminalDomain
F,
X [auth f]
IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
G [auth H],
Y [auth h]
IPR036863Photosystem II reaction centre protein H superfamilyHomologous Superfamily
G [auth H],
Y [auth h]
IPR001056Photosystem II reaction centre protein HFamily
BA [auth k],
J [auth K]
IPR037270Photosystem II PsbK superfamilyHomologous Superfamily
BA [auth k],
J [auth K]
IPR003687Photosystem II PsbKFamily
CA [auth l],
K [auth L]
IPR003372Photosystem II PsbLFamily
CA [auth l],
K [auth L]
IPR037266Photosystem II PsbL superfamilyHomologous Superfamily
JA [auth z],
R [auth Z]
IPR036512Photosystem II PsbZ superfamilyHomologous Superfamily
JA [auth z],
R [auth Z]
IPR002644Photosystem II PsbZ, reaction centreFamily
DA [auth o],
L [auth O]
IPR011250Outer membrane protein/outer membrane enzyme PagP, beta-barrelHomologous Superfamily
DA [auth o],
L [auth O]
IPR002628Photosystem II extrinsic protein OFamily
EA [auth t],
M [auth T]
IPR001743Photosystem II PsbTFamily
EA [auth t],
M [auth T]
IPR037268Photosystem II PsbT superfamilyHomologous Superfamily
FA [auth u],
N [auth U]
IPR010527Photosystem II PsbU, oxygen evolving complexFamily
GA [auth v],
O [auth V]
IPR017851Photosystem II extrinsic protein V, cytochrome c-550 precursorFamily
GA [auth v],
O [auth V]
IPR016003Photosystem II extrinsic protein V, cytochrome c-550 precursor-likeFamily
GA [auth v],
O [auth V]
IPR036909Cytochrome c-like domain superfamilyHomologous Superfamily
GA [auth v],
O [auth V]
IPR009056Cytochrome c-like domainDomain
GA [auth v],
O [auth V]
IPR029490Cytochrome c-550 domainDomain
HA [auth y],
P [auth Y]
IPR010284Photosystem II reaction center protein Ycf12Family
IA [auth x],
Q [auth X]
IPR009518Photosystem II PsbXFamily
IA [auth x],
Q [auth X]
IPR023431Photosystem II PsbX, type 1 subfamilyFamily
C,
U [auth c]
IPR036001Photosystem antenna protein-like superfamilyHomologous Superfamily
C,
U [auth c]
IPR000932Photosystem antenna protein-likeFamily
C,
U [auth c]
IPR005869Photosystem II CP43 reaction centre proteinFamily
C,
U [auth c]
IPR044900Photosystem II CP43 reaction centre protein superfamilyHomologous Superfamily
D,
V [auth d]
IPR005868Photosystem II D2Family
D,
V [auth d]
IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
D,
V [auth d]
IPR000484Photosynthetic reaction centre, L/MFamily
D,
V [auth d]
IPR055265Photosynthetic reaction centre, L/M, conserved siteConserved Site
D,
V [auth d]
IPR055266Photosystem II protein D1/D2Family
E,
W [auth e]
IPR013081Photosystem II cytochrome b559, N-terminalDomain
E,
W [auth e]
IPR006217Photosystem II cytochrome b559, alpha subunitFamily
E,
W [auth e]
IPR013082Photosystem II cytochrome b559, alpha subunit, lumenal regionDomain
E,
W [auth e]
IPR037025Photosystem II cytochrome b559, alpha subunit superfamilyHomologous Superfamily
E,
W [auth e]
IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
H [auth I],
Z [auth i]
IPR037271Photosystem II PsbI superfamilyHomologous Superfamily
H [auth I],
Z [auth i]
IPR003686Photosystem II PsbIFamily
AA [auth j],
I [auth J]
IPR002682Photosystem II PsbJFamily
AA [auth j],
I [auth J]
IPR037267Photosystem II PsbJ superfamilyHomologous Superfamily

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
EA [auth t],
M [auth T]
FME Parent Component: MET

RESIDAA0021 , AA0566

PSI-MOD :  N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891
H [auth I],
Z [auth i]
FME Parent Component: MET

RESIDAA0021 , AA0566 , AA0021 , AA0566

PSI-MOD :  N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 , N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891