5OWP
Crystal structure of glycopeptide "GVTSAfPDT*RPAP" in complex with scFv-SM3
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth H] | V-set | e5owpH2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
A [auth H] | V-set_12 | e5owpH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_12 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth H] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
A [auth H] | scFv-SM3, V-III region J606,Ig lambda-1 chain V region H2020 | SCFV-HEAVY-LAMBDA | Mus musculus (house mouse) | IGHV6-6*02, IGHJ4*01, IGLV1*01, IGLJ1*01 | V-DOMAIN VH, V-DOMAIN V-LAMBDA | IG | SCFV-HEAVY-LAMBDA | IMGT (202443-0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth H] | PF07686 | Immunoglobulin V-set domain (V-set) | Immunoglobulin V-set domain | This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A [auth H] | Ig heavy chain V-III region J606,Ig lambda-1 chain V region H2020 |
| ||
B [auth D] | 5,6-DIHYDRO-BENZO[H]CINNOLIN-3-YLAMINE | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth H] | IPR050150 | Immunoglobulin Variable Light Chain | Family |
A [auth H] | IPR013783 | Immunoglobulin-like fold | Homologous Superfamily |
A [auth H] | IPR036179 | Immunoglobulin-like domain superfamily | Homologous Superfamily |
A [auth H] | IPR013106 | Immunoglobulin V-set domain | Domain |
A [auth H] | IPR003599 | Immunoglobulin domain subtype | Domain |
A [auth H] | IPR007110 | Immunoglobulin-like domain | Domain |
A [auth H] | IPR050199 | Immunoglobulin Heavy Variable | Family |
A [auth H] | IPR013783 | Immunoglobulin-like fold | Homologous Superfamily |
A [auth H] | IPR036179 | Immunoglobulin-like domain superfamily | Homologous Superfamily |
A [auth H] | IPR013106 | Immunoglobulin V-set domain | Domain |
A [auth H] | IPR003599 | Immunoglobulin domain subtype | Domain |
A [auth H] | IPR007110 | Immunoglobulin-like domain | Domain |