5SCD
Structure of liver pyruvate kinase in complex with anthraquinone derivative 58
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | PK C-terminal domain-like | 8043050 | 3000442 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Phosphoenolpyruvate/pyruvate domain | 8043048 | 3000510 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Phosphoenolpyruvate/pyruvate domain | 8043048 | 3000510 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | PK C-terminal domain-like | 8043050 | 3000442 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Phosphoenolpyruvate/pyruvate domain | 8043048 | 3000510 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Phosphoenolpyruvate/pyruvate domain | 8043048 | 3000510 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Phosphoenolpyruvate/pyruvate domain | 8043048 | 3000510 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Phosphoenolpyruvate/pyruvate domain | 8043048 | 3000510 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | PK C-terminal domain-like | 8043050 | 3000442 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Phosphoenolpyruvate/pyruvate domain | 8043048 | 3000510 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Phosphoenolpyruvate/pyruvate domain | 8043048 | 3000510 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | PK C-terminal domain-like | 8043050 | 3000442 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | PK C-terminal domain-like | 8043050 | 3000442 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Phosphoenolpyruvate/pyruvate domain | 8043048 | 3000510 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Phosphoenolpyruvate/pyruvate domain | 8043048 | 3000510 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Phosphoenolpyruvate/pyruvate domain | 8043048 | 3000510 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | PK C-terminal domain-like | 8043050 | 3000442 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Phosphoenolpyruvate/pyruvate domain | 8043048 | 3000510 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Phosphoenolpyruvate/pyruvate domain | 8043048 | 3000510 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Phosphoenolpyruvate/pyruvate domain | 8043048 | 3000510 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | PK C-terminal domain-like | 8043050 | 3000442 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Phosphoenolpyruvate/pyruvate domain | 8043048 | 3000510 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Phosphoenolpyruvate/pyruvate domain | 8043048 | 3000510 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | PK C-terminal domain-like | 8043050 | 3000442 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PK_1st | e5scdA1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PK_1st | ECOD (1.6) |
A | PK_C | e5scdA2 | A: a/b three-layered sandwiches | X: PK C-terminal domain-like (From Topology) | H: PK C-terminal domain-like (From Topology) | T: PK C-terminal domain-like | F: PK_C | ECOD (1.6) |
B | PK_1st | e5scdB1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PK_1st | ECOD (1.6) |
B | PK_C | e5scdB2 | A: a/b three-layered sandwiches | X: PK C-terminal domain-like (From Topology) | H: PK C-terminal domain-like (From Topology) | T: PK C-terminal domain-like | F: PK_C | ECOD (1.6) |
C | PK_1st | e5scdC2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PK_1st | ECOD (1.6) |
C | PK_C | e5scdC1 | A: a/b three-layered sandwiches | X: PK C-terminal domain-like (From Topology) | H: PK C-terminal domain-like (From Topology) | T: PK C-terminal domain-like | F: PK_C | ECOD (1.6) |
D | PK_1st | e5scdD2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PK_1st | ECOD (1.6) |
D | PK_C | e5scdD1 | A: a/b three-layered sandwiches | X: PK C-terminal domain-like (From Topology) | H: PK C-terminal domain-like (From Topology) | T: PK C-terminal domain-like | F: PK_C | ECOD (1.6) |
E | PK_1st | e5scdE2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PK_1st | ECOD (1.6) |
E | PK_C | e5scdE1 | A: a/b three-layered sandwiches | X: PK C-terminal domain-like (From Topology) | H: PK C-terminal domain-like (From Topology) | T: PK C-terminal domain-like | F: PK_C | ECOD (1.6) |
F | PK_1st | e5scdF2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PK_1st | ECOD (1.6) |
F | PK_C | e5scdF1 | A: a/b three-layered sandwiches | X: PK C-terminal domain-like (From Topology) | H: PK C-terminal domain-like (From Topology) | T: PK C-terminal domain-like | F: PK_C | ECOD (1.6) |
G | PK_1st | e5scdG2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PK_1st | ECOD (1.6) |
G | PK_C | e5scdG1 | A: a/b three-layered sandwiches | X: PK C-terminal domain-like (From Topology) | H: PK C-terminal domain-like (From Topology) | T: PK C-terminal domain-like | F: PK_C | ECOD (1.6) |
H | PK_1st | e5scdH1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PK_1st | ECOD (1.6) |
H | PK_C | e5scdH2 | A: a/b three-layered sandwiches | X: PK C-terminal domain-like (From Topology) | H: PK C-terminal domain-like (From Topology) | T: PK C-terminal domain-like | F: PK_C | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02887 | Pyruvate kinase, alpha/beta domain (PK_C) | Pyruvate kinase, alpha/beta domain | Pyruvate kinase catalyses the final step in glycolysis, the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP [1,2]. The structure of several pyruvate kinases from various organisms have been determined [2, ... | Domain | |
PF00224 | Pyruvate kinase, barrel domain (PK) | Pyruvate kinase, barrel domain | This is the barrel domain of pyruvate kinases. This domain represents the beta/alpha barrel and the small beta-barrel domain inserted within it. The active site is found in a cleft between the two domains [1,2,3,4]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR011037 | Pyruvate kinase-like, insert domain superfamily | Homologous Superfamily | |
IPR015806 | Pyruvate kinase, insert domain superfamily | Homologous Superfamily | |
IPR036918 | Pyruvate kinase, C-terminal domain superfamily | Homologous Superfamily | |
IPR040442 | Pyruvate kinase-like domain superfamily | Homologous Superfamily | |
IPR015793 | Pyruvate kinase, barrel | Domain | |
IPR015795 | Pyruvate kinase, C-terminal | Domain | |
IPR015813 | Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily | Homologous Superfamily | |
IPR001697 | Pyruvate kinase | Family | |
IPR018209 | Pyruvate kinase, active site | Active Site |
Pharos: Disease Associations Pharos Homepage Annotation
Chains | Drug Target   | Associated Disease |
---|---|---|
P30613 | :