5VOT
Structure of AMPA receptor-TARP complex
External Resource: Annotation
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Type 2 solute binding protein-like | 8036483 | 3000083 | SCOP2B (2022-06-29) |
B [auth C] | SCOP2B Superfamily | Type 2 solute binding protein-like | 8036483 | 3000083 | SCOP2B (2022-06-29) |
C [auth D] | SCOP2B Superfamily | Type 2 solute binding protein-like | 8036483 | 3000083 | SCOP2B (2022-06-29) |
H [auth B] | SCOP2B Superfamily | Type 2 solute binding protein-like | 8036483 | 3000083 | SCOP2B (2022-06-29) |
E [auth F] | SCOP2B Superfamily | Claudin-like | 8092551 | 3002606 | SCOP2B (2022-06-29) |
G [auth H] | SCOP2B Superfamily | Claudin-like | 8092551 | 3002606 | SCOP2B (2022-06-29) |
D [auth E] | SCOP2 Family | CACNG1-like | 8078230 | 4006459 | SCOP2 (2022-06-29) |
D [auth E] | SCOP2 Superfamily | Claudin-like | 8092551 | 3002606 | SCOP2 (2022-06-29) |
F [auth G] | SCOP2B Superfamily | Claudin-like | 8092551 | 3002606 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00060 | e5votA1 | A: alpha complex topology | X: Voltage-gated ion channels (From Topology) | H: Voltage-gated ion channels (From Topology) | T: Voltage-gated ion channels | F: PF00060 | ECOD (1.6) |
A | PF10613 | e5votA2 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: PF10613 | ECOD (1.6) |
B [auth C] | PF00060 | e5votC2 | A: alpha complex topology | X: Voltage-gated ion channels (From Topology) | H: Voltage-gated ion channels (From Topology) | T: Voltage-gated ion channels | F: PF00060 | ECOD (1.6) |
B [auth C] | PF10613 | e5votC1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: PF10613 | ECOD (1.6) |
C [auth D] | PF00060 | e5votD1 | A: alpha complex topology | X: Voltage-gated ion channels (From Topology) | H: Voltage-gated ion channels (From Topology) | T: Voltage-gated ion channels | F: PF00060 | ECOD (1.6) |
C [auth D] | PF10613 | e5votD2 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: PF10613 | ECOD (1.6) |
H [auth B] | PF00060 | e5votB2 | A: alpha complex topology | X: Voltage-gated ion channels (From Topology) | H: Voltage-gated ion channels (From Topology) | T: Voltage-gated ion channels | F: PF00060 | ECOD (1.6) |
H [auth B] | PF10613 | e5votB1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: PF10613 | ECOD (1.6) |
E [auth F] | PF00822 | e5votF1 | A: alpha bundles | X: Bromodomain-like | H: Claudin (From Topology) | T: Claudin | F: PF00822 | ECOD (1.6) |
G [auth H] | PF00822 | e5votH1 | A: alpha bundles | X: Bromodomain-like | H: Claudin (From Topology) | T: Claudin | F: PF00822 | ECOD (1.6) |
D [auth E] | PF00822 | e5votE1 | A: alpha bundles | X: Bromodomain-like | H: Claudin (From Topology) | T: Claudin | F: PF00822 | ECOD (1.6) |
F [auth G] | PF00822 | e5votG1 | A: alpha bundles | X: Bromodomain-like | H: Claudin (From Topology) | T: Claudin | F: PF00822 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, B [auth C], C [auth D], H [auth B] | PF00060 | Ligand-gated ion channel (Lig_chan) | Ligand-gated ion channel | - | Family |
A, B [auth C], C [auth D], H [auth B] | PF00497 | Bacterial extracellular solute-binding proteins, family 3 (SBP_bac_3) | Bacterial extracellular solute-binding proteins, family 3 | This is a sensor domain found in solute-binding protein family 3 members from Gram-positive bacteria, Gram-negative bacteria and archaea. It can also be found in the N-terminal of the membrane-bound lytic murein transglycosylase F (MltF) protein. Th ... | Domain |
A, B [auth C], C [auth D], H [auth B] | PF10613 | Ligated ion channel L-glutamate- and glycine-binding site (Lig_chan-Glu_bd) | Ligated ion channel L-glutamate- and glycine-binding site | This region, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and it binds L-glutamate and glycine [2]. It is found in association with Lig_chan, Pfam:PF ... | Domain |
D [auth E], E [auth F], F [auth G], G [auth H] | PF00822 | PMP-22/EMP/MP20/Claudin family (PMP22_Claudin) | PMP-22/EMP/MP20/Claudin family | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Alpha-helical polytopic | Ion channel (VIC) superfamily | Glutamate-gated Ion Channel (GIC) family |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
Chains | External Link | Comment |
---|---|---|
MemProtMD | Annotated as membrane protein by MemProtMD |