5W9A
The structure of the Trim5alpha Bbox- coiled coil in complex LC3B
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth C] | d5w9ac_ | Alpha and beta proteins (a+b) | beta-Grasp (ubiquitin-like) | Ubiquitin-like | GABARAP-like | automated matches | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
C [auth D] | d5w9ad_ | Alpha and beta proteins (a+b) | beta-Grasp (ubiquitin-like) | Ubiquitin-like | GABARAP-like | automated matches | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | B-box zinc-binding domain | 8062665 | 3001359 | SCOP2B (2022-06-29) |
D [auth B] | SCOP2B Superfamily | B-box zinc-binding domain | 8062665 | 3001359 | SCOP2B (2022-06-29) |
B [auth C] | SCOP2B Superfamily | Ubiquitin-like | 8038494 | 3000157 | SCOP2B (2022-06-29) |
C [auth D] | SCOP2B Superfamily | Ubiquitin-like | 8038494 | 3000157 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | zf-B_box | e5w9aA1 | A: few secondary structure elements | X: B-box zinc-binding domain-like | H: B-box zinc-binding domain (From Topology) | T: B-box zinc-binding domain | F: zf-B_box | ECOD (1.6) |
D [auth B] | zf-B_box | e5w9aB1 | A: few secondary structure elements | X: B-box zinc-binding domain-like | H: B-box zinc-binding domain (From Topology) | T: B-box zinc-binding domain | F: zf-B_box | ECOD (1.6) |
B [auth C] | Atg8 | e5w9aC1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Atg8 | ECOD (1.6) |
C [auth D] | Atg8 | e5w9aD1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Atg8 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B [auth C] | 3.10.20.90 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | Phosphatidylinositol 3-kinase Catalytic Subunit | CATH (4.3.0) |
C [auth D] | 3.10.20.90 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | Phosphatidylinositol 3-kinase Catalytic Subunit | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, D [auth B] | PF00643 | B-box zinc finger (zf-B_box) | B-box zinc finger | - | Domain |
B [auth C], C [auth D] | PF02991 | Autophagy protein Atg8 ubiquitin like (ATG8) | Autophagy protein Atg8 ubiquitin like | Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [1]. Autophagy is generally known as a process involved in the degradation of ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, D [auth B] | IPR013320 | Concanavalin A-like lectin/glucanase domain superfamily | Homologous Superfamily |
A, D [auth B] | IPR043136 | B30.2/SPRY domain superfamily | Homologous Superfamily |
A, D [auth B] | IPR003877 | SPRY domain | Domain |
A, D [auth B] | IPR017907 | Zinc finger, RING-type, conserved site | Conserved Site |
A, D [auth B] | IPR000315 | B-box-type zinc finger | Domain |
A, D [auth B] | IPR001870 | B30.2/SPRY domain | Domain |
A, D [auth B] | IPR027370 | Zinc finger, RING-type, eukaryotic | Domain |
A, D [auth B] | IPR013083 | Zinc finger, RING/FYVE/PHD-type | Homologous Superfamily |
A, D [auth B] | IPR003879 | Butyrophylin-like, SPRY domain | Domain |
A, D [auth B] | IPR050143 | Tripartite motif-containing | Family |
A, D [auth B] | IPR001841 | Zinc finger, RING-type | Domain |
B [auth C], C [auth D] | IPR004241 | Autophagy protein Atg8 ubiquitin-like | Family |
B [auth C], C [auth D] | IPR029071 | Ubiquitin-like domain superfamily | Homologous Superfamily |
Pharos: Disease Associations Pharos Homepage Annotation
Chains | Drug Target   | Associated Disease |
---|---|---|
B [auth C], C [auth D] | Q9GZQ8 | :