Structure of Paenibacillus xanthan lyase to 2.6 A resolution
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | CBM_6 | e6f2pA4 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Galactose-binding domain-like | F: CBM_6 | ECOD (1.6) |
A | CBM_35 | e6f2pA5 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Galactose-binding domain-like | F: CBM_35 | ECOD (1.6) |
A | Lyase_8_C_1 | e6f2pA3 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: Hyaluronate lyase-like, C-terminal domain (From Topology) | T: Hyaluronate lyase-like, C-terminal domain | F: Lyase_8_C_1 | ECOD (1.6) |
A | Lyase_8 | e6f2pA1 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: supersandwich (From Topology) | T: supersandwich | F: Lyase_8 | ECOD (1.6) |
A | Lyase_8_N | e6f2pA2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: alpha/alpha toroid (From Topology) | T: alpha/alpha toroid | F: Lyase_8_N | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF08124 | Polysaccharide lyase family 8, N terminal alpha-helical domain (Lyase_8_N) | Polysaccharide lyase family 8, N terminal alpha-helical domain | - | Repeat | |
PF02278 | Polysaccharide lyase family 8, super-sandwich domain (Lyase_8) | Polysaccharide lyase family 8, super-sandwich domain | - | Family | |
PF02884 | Polysaccharide lyase family 8, C-terminal beta-sandwich domain (Lyase_8_C) | Polysaccharide lyase family 8, C-terminal beta-sandwich domain | This family consists of a group of secreted bacterial lyase enzymes EC:4.2.2.1 capable of acting on hyaluronan and chondroitin in the extracellular matrix of host tissues, contributing to the invasive capacity of the pathogen. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Paenibacillus xanthan lyase |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR033803 | CBM6/CBM35/CBM36-like 2 | Domain | |
IPR011071 | Polysaccharide lyase family 8-like, C-terminal | Homologous Superfamily | |
IPR008979 | Galactose-binding-like domain superfamily | Homologous Superfamily | |
IPR012970 | Polysaccharide lyase 8, N-terminal alpha-helical | Domain | |
IPR004103 | Polysaccharide lyase family 8, C-terminal | Domain | |
IPR038970 | Polysaccharide lyase 8 | Family | |
IPR003159 | Polysaccharide lyase family 8, central domain | Domain | |
IPR008929 | Chondroitin AC/alginate lyase | Homologous Superfamily | |
IPR014718 | Glycoside hydrolase-type carbohydrate-binding | Homologous Superfamily | |
IPR011013 | Galactose mutarotase-like domain superfamily | Homologous Superfamily |