6C5X
Crystal Structure of SOCS1 in complex with ElonginB and ElonginC
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth B] | SCOP2B Superfamily | Ubiquitin-like | 8038575 | 3000157 | SCOP2B (2022-06-29) |
C [auth E] | SCOP2B Superfamily | Ubiquitin-like | 8038575 | 3000157 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | ubiquitin_2 | e6c5xB1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: ubiquitin_2 | ECOD (1.6) |
C [auth E] | ubiquitin_2 | e6c5xE1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: ubiquitin_2 | ECOD (1.6) |
D [auth F] | Skp1_POZ_1 | e6c5xF1 | A: a+b two layers | X: POZ domain (From Topology) | H: POZ domain (From Topology) | T: POZ domain | F: Skp1_POZ_1 | ECOD (1.6) |
B [auth C] | Skp1_POZ_1 | e6c5xC1 | A: a+b two layers | X: POZ domain (From Topology) | H: POZ domain (From Topology) | T: POZ domain | F: Skp1_POZ_1 | ECOD (1.6) |
F [auth A] | SOCS_box | e6c5xA2 | A: alpha arrays | X: SOCS box-like (From Topology) | H: SOCS box-like (From Topology) | T: SOCS box-like | F: SOCS_box | ECOD (1.6) |
F [auth A] | SH2 | e6c5xA1 | A: a+b two layers | X: SH2 (From Topology) | H: SH2 (From Topology) | T: SH2 | F: SH2 | ECOD (1.6) |
E [auth D] | SOCS_box | e6c5xD1 | A: alpha arrays | X: SOCS box-like (From Topology) | H: SOCS box-like (From Topology) | T: SOCS box-like | F: SOCS_box | ECOD (1.6) |
E [auth D] | SH2 | e6c5xD2 | A: a+b two layers | X: SH2 (From Topology) | H: SH2 (From Topology) | T: SH2 | F: SH2 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth B] | 3.10.20.90 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | Phosphatidylinositol 3-kinase Catalytic Subunit | CATH (4.3.0) |
C [auth E] | 3.10.20.90 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | Phosphatidylinositol 3-kinase Catalytic Subunit | CATH (4.3.0) |
D [auth F] | 3.30.710.10 | Alpha Beta | 2-Layer Sandwich | Potassium Channel Kv1.1 | Chain A | CATH (4.3.0) |
B [auth C] | 3.30.710.10 | Alpha Beta | 2-Layer Sandwich | Potassium Channel Kv1.1 | Chain A | CATH (4.3.0) |
E [auth D] | 1.10.750.20 | Mainly Alpha | Orthogonal Bundle | Elongin C | Chain C, domain 1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth B], C [auth E] | PF00240 | Ubiquitin family (ubiquitin) | Ubiquitin family | This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ... | Domain |
B [auth C], D [auth F] | PF03931 | Skp1 family, tetramerisation domain (Skp1_POZ) | Skp1 family, tetramerisation domain | - | Domain |
E [auth D], F [auth A] | PF00017 | SH2 domain (SH2) | SH2 domain | - | Domain |
E [auth D], F [auth A] | PF07525 | SOCS box (SOCS_box) | SOCS box | The SOCS box acts as a bridge between specific substrate- binding domains and more generic proteins that comprise a large family of E3 ubiquitin protein ligases. | Domain |