6DHP
RT XFEL structure of the three-flash state of Photosystem II (3F, S0-rich) at 2.04 Angstrom resolution
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
E | SCOP2B Superfamily | Cytochrome b559 subunits | 8032749 | 3001602 | SCOP2B (2021-05-27) |
Y [auth e] | SCOP2B Superfamily | Cytochrome b559 subunits | 8032749 | 3001602 | SCOP2B (2021-05-27) |
IA [auth t] | SCOP2B Superfamily | Photosystem II reaction center protein T PsbT | 8032769 | 3001561 | SCOP2B (2021-05-27) |
O [auth T] | SCOP2B Superfamily | Photosystem II reaction center protein T PsbT | 8032769 | 3001561 | SCOP2B (2021-05-27) |
A | SCOP2B Superfamily | Bacterial photosystem II reaction centre L and M subunits | 8032741 | 3000736 | SCOP2B (2021-05-27) |
U [auth a] | SCOP2B Superfamily | Bacterial photosystem II reaction centre L and M subunits | 8032741 | 3000736 | SCOP2B (2021-05-27) |
DA [auth k] | SCOP2B Superfamily | Photosystem II reaction center protein K PsbK | 8032757 | 3001585 | SCOP2B (2021-05-27) |
J [auth K] | SCOP2B Superfamily | Photosystem II reaction center protein K PsbK | 8032757 | 3001585 | SCOP2B (2021-05-27) |
EA [auth l] | SCOP2B Superfamily | Photosystem II reaction center protein L PsbL | 8032759 | 3001523 | SCOP2B (2021-05-27) |
K [auth L] | SCOP2B Superfamily | Photosystem II reaction center protein L PsbL | 8032759 | 3001523 | SCOP2B (2021-05-27) |
FA [auth m] | SCOP2B Superfamily | Photosystem II reaction center protein M PsbM | 8032762 | 3001573 | SCOP2B (2021-05-27) |
L [auth M] | SCOP2B Superfamily | Photosystem II reaction center protein M PsbM | 8032762 | 3001573 | SCOP2B (2021-05-27) |
GA [auth o] | SCOP2B Superfamily | OMPA barrel-like | 8032765 | 3000208 | SCOP2B (2021-05-27) |
M [auth O] | SCOP2B Superfamily | OMPA barrel-like | 8032765 | 3000208 | SCOP2B (2021-05-27) |
JA [auth u] | SCOP2B Superfamily | PsbU/PolX domain-like | 8032768 | 3000893 | SCOP2B (2021-05-27) |
P [auth U] | SCOP2B Superfamily | PsbU/PolX domain-like | 8032768 | 3000893 | SCOP2B (2021-05-27) |
KA [auth v] | SCOP2B Superfamily | Cytochrome c | 8036565 | 3000815 | SCOP2B (2021-05-27) |
Q [auth V] | SCOP2B Superfamily | Cytochrome c | 8036565 | 3000815 | SCOP2B (2021-05-27) |
MA [auth y] | SCOP2B Superfamily | Photosystem II reaction center protein Ycf12 | 8093136 | 3002680 | SCOP2B (2021-05-27) |
S [auth Y] | SCOP2B Superfamily | Photosystem II reaction center protein Ycf12 | 8093136 | 3002680 | SCOP2B (2021-05-27) |
B | SCOP2B Superfamily | Photosystem II antenna protein-like | 8032743 | 3001674 | SCOP2B (2021-05-27) |
V [auth b] | SCOP2B Superfamily | Photosystem II antenna protein-like | 8032743 | 3001674 | SCOP2B (2021-05-27) |
NA [auth z] | SCOP2B Superfamily | PsbZ-like | 8032770 | 3001624 | SCOP2B (2021-05-27) |
T [auth Z] | SCOP2B Superfamily | PsbZ-like | 8032770 | 3001624 | SCOP2B (2021-05-27) |
C | SCOP2B Superfamily | Photosystem II antenna protein-like | 8032746 | 3001674 | SCOP2B (2021-05-27) |
W [auth c] | SCOP2B Superfamily | Photosystem II antenna protein-like | 8032746 | 3001674 | SCOP2B (2021-05-27) |
D | SCOP2B Superfamily | Bacterial photosystem II reaction centre L and M subunits | 8032750 | 3000736 | SCOP2B (2021-05-27) |
X [auth d] | SCOP2B Superfamily | Bacterial photosystem II reaction centre L and M subunits | 8032750 | 3000736 | SCOP2B (2021-05-27) |
F | SCOP2B Superfamily | Cytochrome b559 subunits | 8032752 | 3001602 | SCOP2B (2021-05-27) |
Z [auth f] | SCOP2B Superfamily | Cytochrome b559 subunits | 8032752 | 3001602 | SCOP2B (2021-05-27) |
AA [auth h] | SCOP2B Superfamily | Photosystem II 10 kDa phosphoprotein PsbH | 8032753 | 3001547 | SCOP2B (2021-05-27) |
G [auth H] | SCOP2B Superfamily | Photosystem II 10 kDa phosphoprotein PsbH | 8032753 | 3001547 | SCOP2B (2021-05-27) |
BA [auth i] | SCOP2B Superfamily | Photosystem II reaction center protein I PsbI | 8032754 | 3001590 | SCOP2B (2021-05-27) |
H [auth I] | SCOP2B Superfamily | Photosystem II reaction center protein I PsbI | 8032754 | 3001590 | SCOP2B (2021-05-27) |
CA [auth j] | SCOP2B Superfamily | Photosystem II reaction center protein J PsbJ | 8032755 | 3001534 | SCOP2B (2021-05-27) |
I [auth J] | SCOP2B Superfamily | Photosystem II reaction center protein J PsbJ | 8032755 | 3001534 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
E | PF00283,PF00284 | e6dhpE1 | A: extended segments | X: Cytochrome b559 subunits (From Topology) | H: Cytochrome b559 subunits (From Topology) | T: Cytochrome b559 subunits | F: PF00283,PF00284 | ECOD (1.6) |
Y [auth e] | PF00283,PF00284 | e6dhpe1 | A: extended segments | X: Cytochrome b559 subunits (From Topology) | H: Cytochrome b559 subunits (From Topology) | T: Cytochrome b559 subunits | F: PF00283,PF00284 | ECOD (1.6) |
IA [auth t] | PF01405 | e6dhpt1 | A: extended segments | X: Photosystem II reaction center protein T, PsbT (From Topology) | H: Photosystem II reaction center protein T, PsbT (From Topology) | T: Photosystem II reaction center protein T, PsbT | F: PF01405 | ECOD (1.6) |
O [auth T] | PF01405 | e6dhpT1 | A: extended segments | X: Photosystem II reaction center protein T, PsbT (From Topology) | H: Photosystem II reaction center protein T, PsbT (From Topology) | T: Photosystem II reaction center protein T, PsbT | F: PF01405 | ECOD (1.6) |
A | PF00124 | e6dhpA1 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PF00124 | ECOD (1.6) |
U [auth a] | PF00124 | e6dhpa1 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PF00124 | ECOD (1.6) |
DA [auth k] | PF02533 | e6dhpk1 | A: extended segments | X: Photosystem II reaction center protein K, PsbK (From Topology) | H: Photosystem II reaction center protein K, PsbK (From Topology) | T: Photosystem II reaction center protein K, PsbK | F: PF02533 | ECOD (1.6) |
J [auth K] | PF02533 | e6dhpK1 | A: extended segments | X: Photosystem II reaction center protein K, PsbK (From Topology) | H: Photosystem II reaction center protein K, PsbK (From Topology) | T: Photosystem II reaction center protein K, PsbK | F: PF02533 | ECOD (1.6) |
EA [auth l] | PF02419 | e6dhpl1 | A: extended segments | X: Photosystem II reaction center protein L, PsbL (From Topology) | H: Photosystem II reaction center protein L, PsbL (From Topology) | T: Photosystem II reaction center protein L, PsbL | F: PF02419 | ECOD (1.6) |
K [auth L] | PF02419 | e6dhpL1 | A: extended segments | X: Photosystem II reaction center protein L, PsbL (From Topology) | H: Photosystem II reaction center protein L, PsbL (From Topology) | T: Photosystem II reaction center protein L, PsbL | F: PF02419 | ECOD (1.6) |
FA [auth m] | PF05151 | e6dhpm1 | A: extended segments | X: Photosystem II reaction center protein M, PsbM (From Topology) | H: Photosystem II reaction center protein M, PsbM (From Topology) | T: Photosystem II reaction center protein M, PsbM | F: PF05151 | ECOD (1.6) |
L [auth M] | PF05151 | e6dhpM1 | A: extended segments | X: Photosystem II reaction center protein M, PsbM (From Topology) | H: Photosystem II reaction center protein M, PsbM (From Topology) | T: Photosystem II reaction center protein M, PsbM | F: PF05151 | ECOD (1.6) |
GA [auth o] | PF01716 | e6dhpo1 | A: beta barrels | X: Outer membrane meander beta-barrels | H: OMPA-like (From Topology) | T: OMPA-like | F: PF01716 | ECOD (1.6) |
M [auth O] | PF01716 | e6dhpO1 | A: beta barrels | X: Outer membrane meander beta-barrels | H: OMPA-like (From Topology) | T: OMPA-like | F: PF01716 | ECOD (1.6) |
HA [auth r] | PF06298 | e6dhpr1 | A: extended segments | X: Photosystem II protein Y, psbY (From Topology) | H: Photosystem II protein Y, psbY (From Topology) | T: Photosystem II protein Y, psbY | F: PF06298 | ECOD (1.6) |
N [auth R] | PF06298 | e6dhpR1 | A: extended segments | X: Photosystem II protein Y, psbY (From Topology) | H: Photosystem II protein Y, psbY (From Topology) | T: Photosystem II protein Y, psbY | F: PF06298 | ECOD (1.6) |
JA [auth u] | PF06514 | e6dhpu1 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: PF06514 | ECOD (1.6) |
P [auth U] | PF06514 | e6dhpU1 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: PF06514 | ECOD (1.6) |
KA [auth v] | PF14495 | e6dhpv1 | A: alpha arrays | X: Cytochrome c-like | H: Cytochrome c (From Topology) | T: Cytochrome c | F: PF14495 | ECOD (1.6) |
Q [auth V] | PF14495 | e6dhpV1 | A: alpha arrays | X: Cytochrome c-like | H: Cytochrome c (From Topology) | T: Cytochrome c | F: PF14495 | ECOD (1.6) |
LA [auth x] | PF06596 | e6dhpx1 | A: extended segments | X: Photosystem II PsbX protein (From Topology) | H: Photosystem II PsbX protein (From Topology) | T: Photosystem II PsbX protein | F: PF06596 | ECOD (1.6) |
R [auth X] | PF06596 | e6dhpX1 | A: extended segments | X: Photosystem II PsbX protein (From Topology) | H: Photosystem II PsbX protein (From Topology) | T: Photosystem II PsbX protein | F: PF06596 | ECOD (1.6) |
MA [auth y] | PF05969 | e6dhpy1 | A: extended segments | X: Photosystem II reaction center protein ycf12 (From Topology) | H: Photosystem II reaction center protein ycf12 (From Topology) | T: Photosystem II reaction center protein ycf12 | F: PF05969 | ECOD (1.6) |
S [auth Y] | PF05969 | e6dhpY1 | A: extended segments | X: Photosystem II reaction center protein ycf12 (From Topology) | H: Photosystem II reaction center protein ycf12 (From Topology) | T: Photosystem II reaction center protein ycf12 | F: PF05969 | ECOD (1.6) |
B | PF00421 | e6dhpB1 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PF00421 | ECOD (1.6) |
B | PF00421 | e6dhpB2 | A: a+b two layers | X: Photosystem II antenna protein PsbB insertion domain (From Topology) | H: Photosystem II antenna protein PsbB insertion domain (From Topology) | T: Photosystem II antenna protein PsbB insertion domain | F: PF00421 | ECOD (1.6) |
V [auth b] | PF00421 | e6dhpb2 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PF00421 | ECOD (1.6) |
V [auth b] | PF00421 | e6dhpb1 | A: a+b two layers | X: Photosystem II antenna protein PsbB insertion domain (From Topology) | H: Photosystem II antenna protein PsbB insertion domain (From Topology) | T: Photosystem II antenna protein PsbB insertion domain | F: PF00421 | ECOD (1.6) |
NA [auth z] | PF01737 | e6dhpz1 | A: extended segments | X: PsbZ-like (From Topology) | H: PsbZ-like (From Topology) | T: PsbZ-like | F: PF01737 | ECOD (1.6) |
T [auth Z] | PF01737 | e6dhpZ1 | A: extended segments | X: PsbZ-like (From Topology) | H: PsbZ-like (From Topology) | T: PsbZ-like | F: PF01737 | ECOD (1.6) |
C | PF00421 | e6dhpC1 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PF00421 | ECOD (1.6) |
W [auth c] | PF00421 | e6dhpc1 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PF00421 | ECOD (1.6) |
D | PF00124 | e6dhpD1 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PF00124 | ECOD (1.6) |
X [auth d] | PF00124 | e6dhpd1 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PF00124 | ECOD (1.6) |
F | PF00283 | e6dhpF1 | A: extended segments | X: Cytochrome b559 subunits (From Topology) | H: Cytochrome b559 subunits (From Topology) | T: Cytochrome b559 subunits | F: PF00283 | ECOD (1.6) |
Z [auth f] | PF00283 | e6dhpf1 | A: extended segments | X: Cytochrome b559 subunits (From Topology) | H: Cytochrome b559 subunits (From Topology) | T: Cytochrome b559 subunits | F: PF00283 | ECOD (1.6) |
AA [auth h] | PF00737 | e6dhph1 | A: extended segments | X: Photosystem II 10 kDa phosphoprotein PsbH (From Topology) | H: Photosystem II 10 kDa phosphoprotein PsbH (From Topology) | T: Photosystem II 10 kDa phosphoprotein PsbH | F: PF00737 | ECOD (1.6) |
G [auth H] | PF00737 | e6dhpH1 | A: extended segments | X: Photosystem II 10 kDa phosphoprotein PsbH (From Topology) | H: Photosystem II 10 kDa phosphoprotein PsbH (From Topology) | T: Photosystem II 10 kDa phosphoprotein PsbH | F: PF00737 | ECOD (1.6) |
BA [auth i] | PF02532 | e6dhpi1 | A: extended segments | X: Photosystem II reaction center protein I, PsbI (From Topology) | H: Photosystem II reaction center protein I, PsbI (From Topology) | T: Photosystem II reaction center protein I, PsbI | F: PF02532 | ECOD (1.6) |
H [auth I] | PF02532 | e6dhpI1 | A: extended segments | X: Photosystem II reaction center protein I, PsbI (From Topology) | H: Photosystem II reaction center protein I, PsbI (From Topology) | T: Photosystem II reaction center protein I, PsbI | F: PF02532 | ECOD (1.6) |
CA [auth j] | PF01788 | e6dhpj1 | A: extended segments | X: Photosystem II reaction center protein J, PsbJ (From Topology) | H: Photosystem II reaction center protein J, PsbJ (From Topology) | T: Photosystem II reaction center protein J, PsbJ | F: PF01788 | ECOD (1.6) |
I [auth J] | PF01788 | e6dhpJ1 | A: extended segments | X: Photosystem II reaction center protein J, PsbJ (From Topology) | H: Photosystem II reaction center protein J, PsbJ (From Topology) | T: Photosystem II reaction center protein J, PsbJ | F: PF01788 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
IA [auth t], O [auth T] | FME | Parent Component: MET :  AA0021 , AA0566 :  N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 |
FA [auth m], L [auth M] | FME | Parent Component: MET :  AA0021 , AA0566 , AA0021 , AA0566 :  N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 , N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 |
BA [auth i], H [auth I] | FME | Parent Component: MET :  AA0021 , AA0566 , AA0021 , AA0566 , AA0021 , AA0566 :  N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 , N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 , N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 |