6OHP

Structure of compound 1 (halopemide) bound human Phospholipase D2 catalytic domain

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Protein Modification Annotation

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF13091	PLD-like domain (PLDc_2)	PLD-like domain	-	Domain
A, B, C, D	PF00614	Phospholipase D Active site motif (PLDc)	Phospholipase D Active site motif	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Phospholipase D2	binding phospholipid binding lipid binding phosphatidylinositol binding phosphoric ester hydrolase activity phospholipase D activity hydrolase activity, acting on ester bonds phosphoric diester hydrolase activity carboxylic ester hydrolase activity hydrolase activity catalytic activity phospholipase activity lipase activity	cellular component organization organelle organization cellular process cellular component organization or biogenesis cytoskeleton organization phosphatidic acid biosynthetic process glycerophospholipid biosynthetic process cellular biosynthetic process phosphatidic acid metabolic process cellular metabolic process glycerophospholipid metabolic process lipid biosynthetic process primary metabolic process phospholipid biosynthetic process cellular component organization organelle organization cellular process cellular component organization or biogenesis cytoskeleton organization phosphatidic acid biosynthetic process glycerophospholipid biosynthetic process cellular biosynthetic process phosphatidic acid metabolic process cellular metabolic process glycerophospholipid metabolic process lipid biosynthetic process primary metabolic process phospholipid biosynthetic process phospholipid metabolic process biosynthetic process glycerolipid biosynthetic process organophosphate metabolic process organophosphate biosynthetic process cellular lipid metabolic process phosphate-containing compound metabolic process glycerolipid metabolic process metabolic process phosphorus metabolic process lipid metabolic process synaptic vesicle recycling localization cellular localization transport establishment of localization in cell synaptic vesicle cycle establishment of localization vesicle-mediated transport vesicle-mediated transport in synapse lipid catabolic process catabolic process phospholipid catabolic process organophosphate catabolic process cellular lipid catabolic process cellular catabolic process cellular response to stimulus immune response-regulating cell surface receptor signaling pathway involved in phagocytosis import into cell immune response-regulating cell surface receptor signaling pathway regulation of cellular process response to stimulus signaling positive regulation of biological process Fc-gamma receptor signaling pathway involved in phagocytosis cell communication positive regulation of response to stimulus immune response-activating signaling pathway Fc receptor signaling pathway immune response-regulating signaling pathway positive regulation of immune response regulation of immune system process phagocytosis signal transduction Fc-gamma receptor signaling pathway positive regulation of immune system process regulation of biological process cell surface receptor signaling pathway immune response immune response-activating cell surface receptor signaling pathway biological regulation Fc receptor mediated stimulatory signaling pathway immune effector process regulation of response to stimulus immune system process regulation of immune response endocytosis activation of immune response small GTPase-mediated signal transduction intracellular signal transduction intracellular signaling cassette regulation of localization regulation of transport regulation of vesicle-mediated transport	cell periphery plasma membrane membrane cellular anatomical entity membrane-bounded organelle intracellular organelle intracellular anatomical structure organelle intracellular membrane-bounded organelle presynapse synapse cell junction organelle subcompartment endomembrane system cell periphery plasma membrane membrane cellular anatomical entity membrane-bounded organelle intracellular organelle intracellular anatomical structure organelle intracellular membrane-bounded organelle presynapse synapse cell junction organelle subcompartment endomembrane system endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum cytoplasm organelle membrane endoplasmic reticulum membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR015679	Phospholipase D family	Family
A, B, C, D	IPR001849	Pleckstrin homology domain	Domain
A, B, C, D	IPR025202	Phospholipase D-like domain	Domain
A, B, C, D	IPR001683	Phox homology	Domain
A, B, C, D	IPR001736	Phospholipase D/Transphosphatidylase	Domain
A, B, C, D	IPR036871	PX domain superfamily	Homologous Superfamily
A, B, C, D	IPR011993	PH-like domain superfamily	Homologous Superfamily
A, B, C, D	IPR016555	Phospholipase D, eukaryotic type	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D	Pharos: O14939	Cardiomegaly attention deficit hyperactivity disorder, inattentive type swine influenza brain aneurysm systemic lupus erythematosus

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A, B, C, D	PTR	Parent Component: TYR RESID: AA0039 PSI-MOD : O4'-phospho-L-tyrosine MOD:00048

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.