6QPX
Crystal structure of nitrite bound Y323A mutant of haem-Cu containing nitrite reductase from Ralstonia pickettii
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Cu-oxidase_2_2 | e6qpxA1 | A: beta sandwiches | X: Cupredoxin-like | H: Cupredoxin-related (From Topology) | T: Cupredoxin-related | F: Cu-oxidase_2_2 | ECOD (1.6) |
A | Cu-oxidase_3_1 | e6qpxA3 | A: beta sandwiches | X: Cupredoxin-like | H: Cupredoxin-related (From Topology) | T: Cupredoxin-related | F: Cu-oxidase_3_1 | ECOD (1.6) |
A | Cytochrome_CBB3 | e6qpxA2 | A: alpha arrays | X: Cytochrome c-like | H: Cytochrome c (From Topology) | T: Cytochrome c | F: Cytochrome_CBB3 | ECOD (1.6) |
B [auth I] | Cu-oxidase_2_2 | e6qpxI3 | A: beta sandwiches | X: Cupredoxin-like | H: Cupredoxin-related (From Topology) | T: Cupredoxin-related | F: Cu-oxidase_2_2 | ECOD (1.6) |
B [auth I] | Cu-oxidase_3_1 | e6qpxI2 | A: beta sandwiches | X: Cupredoxin-like | H: Cupredoxin-related (From Topology) | T: Cupredoxin-related | F: Cu-oxidase_3_1 | ECOD (1.6) |
B [auth I] | Cytochrome_CBB3 | e6qpxI1 | A: alpha arrays | X: Cytochrome c-like | H: Cytochrome c (From Topology) | T: Cytochrome c | F: Cytochrome_CBB3 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.60.40.420 | Mainly Beta | Sandwich | Immunoglobulin-like | Cupredoxins - blue copper proteins | CATH (utative) |
A | 1.10.760.10 | Mainly Alpha | Orthogonal Bundle | Cytochrome Bc1 Complex | Chain D, domain 2 | CATH (utative) |
B [auth I] | 2.60.40.420 | Mainly Beta | Sandwich | Immunoglobulin-like | Cupredoxins - blue copper proteins | CATH (utative) |
B [auth I] | 1.10.760.10 | Mainly Alpha | Orthogonal Bundle | Cytochrome Bc1 Complex | Chain D, domain 2 | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, B [auth I] | PF07732 | Multicopper oxidase (Cu-oxidase_3) | Multicopper oxidase | This entry contains many divergent copper oxidase-like domains that are not recognised by the Pfam:PF00394 model. | Domain |
A, B [auth I] | PF00034 | Cytochrome c (Cytochrom_C) | Cytochrome c | The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, Pfam:PF06181, has now been merged into this family. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, B [auth I] | IPR051459 | Cytochrome c-type Dehydrogenase | Family |
A, B [auth I] | IPR036909 | Cytochrome c-like domain superfamily | Homologous Superfamily |
A, B [auth I] | IPR008972 | Cupredoxin | Homologous Superfamily |
A, B [auth I] | IPR009056 | Cytochrome c-like domain | Domain |
A, B [auth I] | IPR001287 | Nitrite reductase, copper-type | Family |
A, B [auth I] | IPR011707 | Multicopper oxidase-like, N-terminal | Domain |