6S6S
Structure of Azospirillum brasilense Glutamate Synthase in a4b4 oligomeric state.
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | GXGXG domain-like | 8056850 | 3000109 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | FMN-linked oxidoreductases | 8056848 | 3000014 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Class II glutamine amidotransferases | 8056846 | 3000131 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | FMN-linked oxidoreductases | 8056848 | 3000014 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | GXGXG domain-like | 8056850 | 3000109 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Class II glutamine amidotransferases | 8056846 | 3000131 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | GXGXG domain-like | 8056850 | 3000109 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Class II glutamine amidotransferases | 8056846 | 3000131 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | FMN-linked oxidoreductases | 8056848 | 3000014 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | FMN-linked oxidoreductases | 8056848 | 3000014 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | GXGXG domain-like | 8056850 | 3000109 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Class II glutamine amidotransferases | 8056846 | 3000131 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF01493 | e6s6sA3 | A: beta duplicates or obligate multimers | X: Single-stranded right-handed beta-helix | H: Alpha subunit of glutamate synthase-C (From Topology) | T: Alpha subunit of glutamate synthase-C | F: PF01493 | ECOD (1.6) |
A | PF00310 | e6s6sA5 | A: a+b two layers | X: Alpha-beta plaits | H: Alpha subunit of glutamate synthase, insertion domain (From Topology) | T: Alpha subunit of glutamate synthase, insertion domain | F: PF00310 | ECOD (1.6) |
A | PF00310 | e6s6sA2 | A: a+b four layers | X: Ntn/PP2C | H: Ntn | T: Class II glutamine amidotransferases | F: PF00310 | ECOD (1.6) |
A | PF01645 | e6s6sA4 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF01645 | ECOD (1.6) |
A | PF04898 | e6s6sA1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF04898 | ECOD (1.6) |
B | PF01493 | e6s6sB1 | A: beta duplicates or obligate multimers | X: Single-stranded right-handed beta-helix | H: Alpha subunit of glutamate synthase-C (From Topology) | T: Alpha subunit of glutamate synthase-C | F: PF01493 | ECOD (1.6) |
B | PF00310 | e6s6sB3 | A: a+b two layers | X: Alpha-beta plaits | H: Alpha subunit of glutamate synthase, insertion domain (From Topology) | T: Alpha subunit of glutamate synthase, insertion domain | F: PF00310 | ECOD (1.6) |
B | PF00310 | e6s6sB5 | A: a+b four layers | X: Ntn/PP2C | H: Ntn | T: Class II glutamine amidotransferases | F: PF00310 | ECOD (1.6) |
B | PF01645 | e6s6sB4 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF01645 | ECOD (1.6) |
B | PF04898 | e6s6sB2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF04898 | ECOD (1.6) |
C | PF01493 | e6s6sC2 | A: beta duplicates or obligate multimers | X: Single-stranded right-handed beta-helix | H: Alpha subunit of glutamate synthase-C (From Topology) | T: Alpha subunit of glutamate synthase-C | F: PF01493 | ECOD (1.6) |
C | PF00310 | e6s6sC3 | A: a+b two layers | X: Alpha-beta plaits | H: Alpha subunit of glutamate synthase, insertion domain (From Topology) | T: Alpha subunit of glutamate synthase, insertion domain | F: PF00310 | ECOD (1.6) |
C | PF00310 | e6s6sC1 | A: a+b four layers | X: Ntn/PP2C | H: Ntn | T: Class II glutamine amidotransferases | F: PF00310 | ECOD (1.6) |
C | PF01645 | e6s6sC5 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF01645 | ECOD (1.6) |
C | PF04898 | e6s6sC4 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF04898 | ECOD (1.6) |
D | PF01493 | e6s6sD2 | A: beta duplicates or obligate multimers | X: Single-stranded right-handed beta-helix | H: Alpha subunit of glutamate synthase-C (From Topology) | T: Alpha subunit of glutamate synthase-C | F: PF01493 | ECOD (1.6) |
D | PF00310 | e6s6sD1 | A: a+b two layers | X: Alpha-beta plaits | H: Alpha subunit of glutamate synthase, insertion domain (From Topology) | T: Alpha subunit of glutamate synthase, insertion domain | F: PF00310 | ECOD (1.6) |
D | PF00310 | e6s6sD5 | A: a+b four layers | X: Ntn/PP2C | H: Ntn | T: Class II glutamine amidotransferases | F: PF00310 | ECOD (1.6) |
D | PF01645 | e6s6sD4 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF01645 | ECOD (1.6) |
D | PF04898 | e6s6sD3 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF04898 | ECOD (1.6) |
E [auth G] | PF14691 | e6s6sG2 | A: alpha arrays | X: alpha-helical ferredoxin-like | H: alpha-helical ferredoxin (From Topology) | T: alpha-helical ferredoxin | F: PF14691 | ECOD (1.6) |
E [auth G] | PF07992 | e6s6sG1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: PF07992 | ECOD (1.6) |
E [auth G] | PF13450 | e6s6sG3 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: PF13450 | ECOD (1.6) |
F [auth E] | PF14691 | e6s6sE1 | A: alpha arrays | X: alpha-helical ferredoxin-like | H: alpha-helical ferredoxin (From Topology) | T: alpha-helical ferredoxin | F: PF14691 | ECOD (1.6) |
F [auth E] | PF07992 | e6s6sE2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: PF07992 | ECOD (1.6) |
F [auth E] | PF13450 | e6s6sE3 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: PF13450 | ECOD (1.6) |
G [auth F] | PF14691 | e6s6sF2 | A: alpha arrays | X: alpha-helical ferredoxin-like | H: alpha-helical ferredoxin (From Topology) | T: alpha-helical ferredoxin | F: PF14691 | ECOD (1.6) |
G [auth F] | PF07992 | e6s6sF1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: PF07992 | ECOD (1.6) |
G [auth F] | PF13450 | e6s6sF3 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: PF13450 | ECOD (1.6) |
H | PF14691 | e6s6sH2 | A: alpha arrays | X: alpha-helical ferredoxin-like | H: alpha-helical ferredoxin (From Topology) | T: alpha-helical ferredoxin | F: PF14691 | ECOD (1.6) |
H | PF07992 | e6s6sH3 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: PF07992 | ECOD (1.6) |
H | PF13450 | e6s6sH1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: PF13450 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01645 | Conserved region in glutamate synthase (Glu_synthase) | Conserved region in glutamate synthase | This family represents a region of the glutamate synthase protein. This region is expressed as a separate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned regi ... | Domain | |
PF01493 | GXGXG motif (GXGXG) | GXGXG motif | - | Family | |
PF00310 | Glutamine amidotransferases class-II (GATase_2) | Glutamine amidotransferases class-II | - | Domain | |
PF04898 | Glutamate synthase central domain (Glu_syn_central) | Glutamate synthase central domain | The central domain of glutamate synthase connects the amino terminal amidotransferase domain with the FMN-binding domain and has an alpha / beta overall topology [1]. This domain appears to be a rudimentary form of the FMN-binding TIM barrel accordi ... | Domain | |
E [auth G], F [auth E], G [auth F], H | PF07992 | Pyridine nucleotide-disulphide oxidoreductase (Pyr_redox_2) | Pyridine nucleotide-disulphide oxidoreductase | This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. | Domain |
E [auth G], F [auth E], G [auth F], H | PF14691 | Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster (Fer4_20) | Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster | Domain II of the enzyme dihydroprymidine dehydrogenase binds FAD. Dihydroprymidine dehydrogenase catalyses the first and rate-limiting step of pyrimidine degradation by converting pyrimidines to the corresponding 5,6- dihydro compounds [1]. This doma ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR029055 | Nucleophile aminohydrolases, N-terminal | Homologous Superfamily | |
IPR013785 | Aldolase-type TIM barrel | Homologous Superfamily | |
IPR036485 | Glutamate synthase, alpha subunit, C-terminal domain superfamily | Homologous Superfamily | |
IPR006982 | Glutamate synthase, central-N | Domain | |
IPR002489 | Glutamate synthase, alpha subunit, C-terminal | Domain | |
IPR017932 | Glutamine amidotransferase type 2 domain | Domain | |
IPR002932 | Glutamate synthase domain | Domain | |
E [auth G], F [auth E], G [auth F], H | IPR028261 | Dihydroprymidine dehydrogenase domain II | Domain |
E [auth G], F [auth E], G [auth F], H | IPR006006 | Glutamate synthase NADPH small chain-like | Family |
E [auth G], F [auth E], G [auth F], H | IPR023753 | FAD/NAD(P)-binding domain | Domain |
E [auth G], F [auth E], G [auth F], H | IPR036188 | FAD/NAD(P)-binding domain superfamily | Homologous Superfamily |
E [auth G], F [auth E], G [auth F], H | IPR009051 | Alpha-helical ferredoxin | Homologous Superfamily |