6VP8 | pdb_00006vp8

Cryo-EM structure of the C-terminal half of the Parkinson's Disease-linked protein Leucine Rich Repeat Kinase 2 (LRRK2)

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Protein Modification Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Ras-like P-loop GTPases	8092960	3002022	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	ANAPC4_WD40_4	e6vp8C1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 8-bladed	F: ANAPC4_WD40_4	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.200.20	Alpha Beta	2-Layer Sandwich	Phosphorylase Kinase	domain 1	CATH (utative)
A	1.10.510.10	Mainly Alpha	Orthogonal Bundle	Transferase(Phosphotransferase)	domain 1	CATH (utative)
A	2.130.10.10	Mainly Beta	7 Propeller	Methylamine Dehydrogenase	Chain H	CATH (utative)
B	3.30.200.20	Alpha Beta	2-Layer Sandwich	Phosphorylase Kinase	domain 1	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF16095	C-terminal of Roc, COR, domain (COR)	C-terminal of Roc, COR, domain	-	Family
A	PF08477	Ras of Complex, Roc, domain of DAPkinase (Roc)	Ras of Complex, Roc, domain of DAPkinase	Roc, or Ras of Complex, proteins are mitochondrial Rho proteins (Miro-1, Swiss:Q8IXI2, and Miro-2, Swiss:Q8IXI1) and atypical Rho GTPases. Full-length proteins have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains ...	Roc, or Ras of Complex, proteins are mitochondrial Rho proteins (Miro-1, Swiss:Q8IXI2, and Miro-2, Swiss:Q8IXI1) and atypical Rho GTPases. Full-length proteins have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (Pfam:PF00036) that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis [1,2,3,4].	Domain
A	PF00069	Protein kinase domain (Pkinase)	Protein kinase domain		Domain
B	PF16095	C-terminal of Roc, COR, domain (COR)	C-terminal of Roc, COR, domain	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Leucine-rich repeat serine/threonine-protein kinase 2	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding cytoskeletal protein binding microtubule binding protein binding tubulin binding protein serine/threonine kinase activity histone H3T6 kinase activity catalytic activity, acting on a protein kinase activity protein kinase activity transferase activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups histone H3 kinase activity histone modifying activity catalytic activity histone kinase activity pyrophosphatase activity GTPase activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides histone H3S57 kinase activity clathrin binding guanyl nucleotide binding GTP binding guanyl ribonucleotide binding cation binding magnesium ion binding metal ion binding histone H3T11 kinase activity ribosomal protein S6 kinase activity histone H3S10 kinase activity enzyme regulator activity molecular function activator activity nucleoside-triphosphatase regulator activity GTPase regulator activity enzyme activator activity GTPase activator activity molecular function regulator activity histone H3T45 kinase activity peroxidase activity oxidoreductase activity molecular function inhibitor activity antioxidant activity oxidoreductase activity, acting on peroxide as acceptor peroxidase inhibitor activity enzyme inhibitor activity histone H3T3 kinase activity protein kinase A binding identical protein binding histone H2AXS139 kinase activity histone H2AX kinase activity protein serine kinase activity SNARE binding actin binding 3-phosphoinositide-dependent protein kinase activity protein-containing complex binding beta-catenin destruction complex binding DNA-dependent protein kinase activity JUN kinase kinase kinase activity MAP kinase kinase kinase activity syntaxin-1 binding syntaxin binding GTPase motor activity cytoskeletal motor activity membrane scission GTPase motor activity histone H4S1 kinase activity histone H4 kinase activity GTP-dependent protein kinase activity protein homodimerization activity protein dimerization activity co-receptor binding histone H3S28 kinase activity histone H2B kinase activity histone H2BS36 kinase activity small GTPase binding enzyme binding GTPase binding histone H2AS121 kinase activity histone H2A kinase activity AMP-activated protein kinase activity eukaryotic translation initiation factor 2alpha kinase activity histone H2BS14 kinase activity Rho-dependent protein serine/threonine kinase activity histone H2AT120 kinase activity transmembrane transporter binding histone H2AS1 kinase activity signaling receptor complex adaptor activity protein-macromolecule adaptor activity molecular adaptor activity signaling adaptor activity	cellular response to stimulus regulation of biological process regulation of signaling regulation of cellular process cell surface receptor signaling pathway response to stimulus regulation of Wnt signaling pathway signaling regulation of canonical Wnt signaling pathway canonical Wnt signaling pathway biological regulation regulation of signal transduction cell communication regulation of response to stimulus cellular response to stimulus regulation of biological process regulation of signaling regulation of cellular process cell surface receptor signaling pathway response to stimulus regulation of Wnt signaling pathway signaling regulation of canonical Wnt signaling pathway canonical Wnt signaling pathway biological regulation regulation of signal transduction cell communication regulation of response to stimulus regulation of cell communication cellular process signal transduction Wnt signaling pathway intracellular signal transduction regulation of CAMKK-AMPK signaling cascade calcium-mediated signaling regulation of intracellular signal transduction intracellular signaling cassette regulation of calcium-mediated signaling CAMKK-AMPK signaling cascade regulation of localization import into cell cellular localization regulation of cellular component organization transport synaptic vesicle cycle regulation of synaptic vesicle recycling vesicle-mediated transport presynaptic endocytosis vesicle-mediated transport in synapse cellular component organization localization synaptic vesicle recycling regulation of synaptic vesicle endocytosis establishment of localization in cell cellular component organization or biogenesis regulation of endocytosis synaptic vesicle endocytosis regulation of transport regulation of vesicle-mediated transport establishment of localization endocytosis response to oxidative stress cellular response to chemical stimulus cellular response to stress response to stress response to chemical cellular response to oxidative stress cellular response to chemical stress cellular response to nutrient levels response to nutrient levels response to starvation cellular response to starvation regulation of biological quality regulation of membrane potential developmental process regulation of morphogenesis of a branching structure multicellular organismal process regulation of developmental process nervous system development regulation of branching morphogenesis of a nerve anatomical structure morphogenesis multicellular organism development morphogenesis of a branching structure anatomical structure development branching morphogenesis of a nerve regulation of multicellular organismal process regulation of anatomical structure morphogenesis system development nucleoside phosphate metabolic process ribose phosphate metabolic process purine nucleoside triphosphate metabolic process GTP metabolic process carbohydrate derivative metabolic process primary metabolic process nucleotide metabolic process purine-containing compound metabolic process nucleobase-containing compound metabolic process purine nucleotide metabolic process ribonucleotide metabolic process organophosphate metabolic process nucleobase-containing small molecule metabolic process purine ribonucleoside triphosphate metabolic process phosphate-containing compound metabolic process metabolic process small molecule metabolic process nucleoside triphosphate metabolic process purine ribonucleotide metabolic process phosphorus metabolic process ribonucleoside triphosphate metabolic process regulation of protein binding positive regulation of molecular function regulation of molecular function positive regulation of protein binding regulation of binding positive regulation of binding intracellular transport endosomal transport regulation of cellular localization cytosolic transport retrograde transport, endosome to Golgi regulation of retrograde transport, endosome to Golgi regulation of intracellular transport regulation of protein modification process positive regulation of protein metabolic process positive regulation of biological process regulation of protein ubiquitination positive regulation of post-translational protein modification regulation of primary metabolic process positive regulation of metabolic process positive regulation of protein modification process protein ubiquitination positive regulation of macromolecule metabolic process protein metabolic process regulation of protein modification by small protein conjugation or removal protein modification process positive regulation of cellular process positive regulation of protein modification by small protein conjugation or removal positive regulation of protein ubiquitination regulation of post-translational protein modification regulation of protein metabolic process regulation of macromolecule metabolic process macromolecule modification macromolecule metabolic process post-translational protein modification regulation of metabolic process protein modification by small protein conjugation protein modification by small protein conjugation or removal cellular response to metal ion response to metal ion cellular response to manganese ion response to manganese ion behavior locomotory behavior exploration behavior locomotory exploration behavior organelle organization endoplasmic reticulum organization endomembrane system organization regulation of tumor necrosis factor production positive regulation of macromolecule biosynthetic process positive regulation of tumor necrosis factor superfamily cytokine production positive regulation of biosynthetic process cytokine production regulation of cytokine production regulation of biosynthetic process tumor necrosis factor superfamily cytokine production positive regulation of tumor necrosis factor production gene expression macromolecule biosynthetic process tumor necrosis factor production regulation of gene expression regulation of tumor necrosis factor superfamily cytokine production biosynthetic process positive regulation of gene expression positive regulation of multicellular organismal process regulation of macromolecule biosynthetic process positive regulation of cytokine production cell projection organization regulation of cell projection organization protein phosphorylation phosphorylation peptidyl-amino acid modification peptidyl-threonine modification peptidyl-threonine phosphorylation regulation of neuron projection development cellular developmental process negative regulation of biological process cell development neuron projection development neurogenesis neuron differentiation cell differentiation negative regulation of cellular process negative regulation of cell projection organization plasma membrane bounded cell projection organization negative regulation of cellular component organization negative regulation of neuron projection development generation of neurons neuron development regulation of plasma membrane bounded cell projection organization negative regulation of hydrolase activity negative regulation of GTPase activity regulation of catalytic activity negative regulation of molecular function negative regulation of catalytic activity regulation of GTPase activity regulation of hydrolase activity protein autophosphorylation MAPK cascade regulation of macrophage activation regulation of defense response positive regulation of macrophage activation regulation of response to external stimulus regulation of leukocyte activation positive regulation of microglial cell activation regulation of cell activation positive regulation of neuroinflammatory response myeloid leukocyte activation leukocyte activation positive regulation of response to stimulus macrophage activation positive regulation of cell activation positive regulation of response to external stimulus positive regulation of inflammatory response regulation of response to stress leukocyte activation involved in inflammatory response regulation of neuroinflammatory response positive regulation of leukocyte activation regulation of immune system process positive regulation of immune system process defense response cell activation response to external stimulus regulation of inflammatory response immune system process positive regulation of defense response microglial cell activation inflammatory response glial cell activation regulation of microglial cell activation neuroinflammatory response regulation of protein stability vacuole organization lytic vacuole organization homeostatic process regulation of intracellular pH lysosome organization cellular homeostasis chemical homeostasis intracellular monoatomic cation homeostasis regulation of pH monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis regulation of lysosomal lumen pH regulation of cellular pH intracellular monoatomic ion homeostasis protein localization negative regulation of establishment of protein localization to mitochondrion establishment of protein localization regulation of protein localization protein targeting regulation of protein targeting to mitochondrion cellular macromolecule localization negative regulation of protein localization negative regulation of protein targeting to mitochondrion regulation of establishment of protein localization negative regulation of establishment of protein localization regulation of establishment of protein localization to mitochondrion establishment of protein localization to organelle regulation of protein targeting macromolecule localization protein localization to organelle protein localization to mitochondrion protein targeting to mitochondrion establishment of protein localization to mitochondrion positive regulation of phosphorylation regulation of protein phosphorylation positive regulation of phosphate metabolic process regulation of phosphate metabolic process positive regulation of protein phosphorylation positive regulation of phosphorus metabolic process regulation of phosphorus metabolic process regulation of phosphorylation trans-synaptic signaling modulation of chemical synaptic transmission synaptic transmission, glutamatergic cell-cell signaling regulation of synaptic transmission, glutamatergic chemical synaptic transmission synaptic signaling regulation of trans-synaptic signaling anterograde trans-synaptic signaling plasma membrane bounded cell projection morphogenesis cell morphogenesis cell projection morphogenesis neuron projection morphogenesis neuron projection arborization catabolic process autophagy regulation of catabolic process regulation of autophagy process utilizing autophagic mechanism reactive oxygen species metabolic process regulation of reactive oxygen species metabolic process mitochondrion organization neuroblast proliferation cell population proliferation regulation of neuroblast proliferation regulation of cell population proliferation neural precursor cell proliferation regulation of neural precursor cell proliferation head development forebrain development olfactory lobe development animal organ development brain development tangential migration from the subventricular zone to the olfactory bulb telencephalon cell migration central nervous system development forebrain cell migration cell migration telencephalon development cell motility olfactory bulb development negative regulation of protein binding negative regulation of binding negative regulation of thioredoxin peroxidase activity by peptidyl-threonine phosphorylation organelle fission mitochondrial fission regulation of organelle organization regulation of mitochondrial fission regulation of mitochondrion organization positive regulation of proteasomal protein catabolic process proteolysis involved in protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process regulation of ubiquitin-dependent protein catabolic process positive regulation of ubiquitin-dependent protein catabolic process regulation of proteolysis regulation of proteolysis involved in protein catabolic process modification-dependent macromolecule catabolic process proteolysis proteasomal protein catabolic process protein catabolic process positive regulation of protein catabolic process positive regulation of proteolysis involved in protein catabolic process positive regulation of catabolic process regulation of proteasomal ubiquitin-dependent protein catabolic process modification-dependent protein catabolic process positive regulation of proteolysis regulation of proteasomal protein catabolic process positive regulation of proteasomal ubiquitin-dependent protein catabolic process ubiquitin-dependent protein catabolic process regulation of protein catabolic process regulation of cAMP/PKA signal transduction cAMP/PKA signal transduction cellular response to nitrogen compound response to dopamine cellular response to dopamine response to monoamine regulation of dopamine receptor signaling pathway response to catecholamine cellular response to catecholamine stimulus regulation of G protein-coupled receptor signaling pathway G protein-coupled dopamine receptor signaling pathway response to oxygen-containing compound response to nitrogen compound cellular response to oxygen-containing compound cellular response to monoamine stimulus G protein-coupled receptor signaling pathway JNK cascade regulation of ER to Golgi vesicle-mediated transport endoplasmic reticulum to Golgi vesicle-mediated transport Golgi vesicle transport regulation of transferase activity positive regulation of protein kinase activity positive regulation of transferase activity positive regulation of catalytic activity regulation of protein kinase activity positive regulation of kinase activity regulation of kinase activity small GTPase-mediated signal transduction Rho protein signal transduction positive regulation of autophagy regulation of synapse structure or activity synapse organization dendritic spine morphogenesis dendritic spine development postsynapse organization dendritic spine organization regulation of postsynapse organization dendrite development dendrite morphogenesis cell morphogenesis involved in neuron differentiation regulation of synapse organization cell junction organization regulation of dendritic spine morphogenesis neuron projection organization negative regulation of signaling negative regulation of intracellular signal transduction regulation of cellular response to stress regulation of response to endoplasmic reticulum stress negative regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway regulation of programmed cell death intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress regulation of intrinsic apoptotic signaling pathway negative regulation of cell communication regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway negative regulation of apoptotic signaling pathway intrinsic apoptotic signaling pathway response to endoplasmic reticulum stress negative regulation of response to endoplasmic reticulum stress negative regulation of response to stimulus negative regulation of programmed cell death regulation of apoptotic process cell death negative regulation of signal transduction apoptotic signaling pathway negative regulation of intrinsic apoptotic signaling pathway negative regulation of apoptotic process apoptotic process programmed cell death regulation of apoptotic signaling pathway regulation of protein autoubiquitination protein autoubiquitination positive regulation of protein autoubiquitination Notch signaling pathway negative regulation of Notch signaling pathway regulation of Notch signaling pathway regulation of postsynaptic membrane potential system process chemical synaptic transmission, postsynaptic nervous system process excitatory postsynaptic potential positive regulation of cell communication positive regulation of signal transduction regulation of MAP kinase activity positive regulation of protein serine/threonine kinase activity positive regulation of MAP kinase activity positive regulation of MAPK cascade positive regulation of intracellular signal transduction regulation of MAPK cascade regulation of protein serine/threonine kinase activity positive regulation of signaling mitochondrion localization organelle localization regulation of protein maturation negative regulation of proteolysis negative regulation of protein maturation protein maturation negative regulation of protein metabolic process negative regulation of macromolecule metabolic process negative regulation of metabolic process negative regulation of gene expression negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process regulation of protein processing protein processing negative regulation of protein processing positive regulation of programmed cell death macroautophagy negative regulation of organelle assembly autophagosome organization cellular component biogenesis cellular component assembly negative regulation of autophagosome assembly negative regulation of catabolic process autophagosome assembly organelle assembly regulation of autophagosome assembly regulation of vacuole organization regulation of cellular component biogenesis negative regulation of macroautophagy regulation of macroautophagy negative regulation of organelle organization negative regulation of autophagy regulation of organelle assembly positive regulation of G protein-coupled receptor signaling pathway positive regulation of dopamine receptor signaling pathway positive regulation of Wnt signaling pathway positive regulation of canonical Wnt signaling pathway positive regulation of cellular component organization positive regulation of synaptic vesicle recycling positive regulation of endocytosis positive regulation of synaptic vesicle endocytosis positive regulation of transport Golgi organization regulation of cell differentiation regulation of neuron maturation regulation of cell development cell maturation regulation of cell maturation developmental maturation anatomical structure maturation neuron maturation regulation of neuron differentiation spermatogenesis sexual reproduction reproductive process multicellular organismal reproductive process developmental process involved in reproduction male gamete generation gamete generation Wnt signalosome assembly protein-containing complex organization protein-containing complex assembly nitrogen compound transport nucleocytoplasmic transport nuclear transport protein localization to nucleus import into nucleus protein transport protein import into nucleus intracellular protein transport regulation of kidney size renal system development kidney morphogenesis animal organ morphogenesis kidney development regulation of anatomical structure size vesicle localization establishment of organelle localization establishment of vesicle localization regulation of synaptic vesicle transport synaptic vesicle localization synaptic vesicle transport peptidyl-serine modification peptidyl-serine phosphorylation protein processing involved in protein targeting to mitochondrion regulation of protein processing involved in protein targeting to mitochondrion negative regulation of protein processing involved in protein targeting to mitochondrion mitochondrial protein processing striatum development subpallium development regulated exocytosis synaptic vesicle exocytosis regulation of regulated secretory pathway regulation of secretion by cell secretion by cell signal release neurotransmitter secretion secretion regulation of neurotransmitter transport regulation of synaptic vesicle exocytosis export from cell neurotransmitter transport regulation of secretion signal release from synapse exocytosis regulation of neurotransmitter secretion regulation of exocytosis mitochondrion distribution intracellular distribution of mitochondria neuromuscular junction development regulation of mitochondrial depolarization mitochondrial depolarization regulation of membrane depolarization regulation of mitochondrial membrane potential membrane depolarization determination of adult lifespan protein localization to endoplasmic reticulum exit site protein localization to endoplasmic reticulum response to reactive oxygen species cellular response to reactive oxygen species late endosome to lysosome transport negative regulation of transport lysosomal transport negative regulation of late endosome to lysosome transport negative regulation of intracellular transport negative regulation of vacuolar transport regulation of vacuolar transport vacuolar transport regulation of late endosome to lysosome transport regulation of system process modulation of excitatory postsynaptic potential regulation of nervous system process negative regulation of excitatory postsynaptic potential regulation of locomotion locomotion	membrane-bounded organelle intracellular organelle amphisome cellular anatomical structure intracellular anatomical structure organelle vacuole autophagosome cytoplasm intracellular membrane-bounded organelle extracellular region extracellular space mitochondrial membrane organelle inner membrane membrane-bounded organelle intracellular organelle amphisome cellular anatomical structure intracellular anatomical structure organelle vacuole autophagosome cytoplasm intracellular membrane-bounded organelle extracellular region extracellular space mitochondrial membrane organelle inner membrane mitochondrion membrane mitochondrial inner membrane organelle envelope mitochondrial envelope organelle membrane cytosolic region presynapse presynaptic cytosol synapse cell junction cytosol cell periphery plasma membrane organelle subcompartment endomembrane system endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum endoplasmic reticulum membrane endosome intracellular vesicle cytoplasmic vesicle vesicle membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen organelle lumen multivesicular body, internal vesicle late endosome multivesicular body extracellular exosome extracellular vesicle extracellular organelle extracellular membrane-bounded organelle somatodendritic compartment cell projection dendrite dendritic tree neuron projection plasma membrane bounded cell projection glutamatergic synapse Golgi apparatus subcompartment Golgi apparatus trans-Golgi network cytoskeleton membraneless organelle intracellular membraneless organelle cell body neuronal cell body transport vesicle membrane bounding membrane of organelle vesicle membrane synaptic vesicle synaptic vesicle membrane transport vesicle exocytic vesicle membrane cytoplasmic vesicle membrane secretory vesicle exocytic vesicle perikaryon Golgi membrane membrane microdomain membrane raft caveola neck plasma membrane raft plasma membrane region caveola autolysosome lytic vacuole secondary lysosome lysosome phagocytic vesicle endocytic vesicle neuron projection cytoplasm cytoplasmic region plasma membrane bounded cell projection cytoplasm dendrite cytoplasm protein-containing complex ribonucleoprotein complex endoplasmic reticulum exit site actin-based cell projection microvillus organelle outer membrane mitochondrial outer membrane outer membrane axon postsynapse axon terminus distal axon terminal bouton neuron projection terminus Golgi-associated vesicle cytoplasmic side of membrane cytoplasmic side of mitochondrial outer membrane side of membrane growth cone site of polarized growth Wnt signalosome
B	Leucine-rich repeat serine/threonine-protein kinase 2	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding cytoskeletal protein binding microtubule binding protein binding tubulin binding protein serine/threonine kinase activity histone H3T6 kinase activity catalytic activity, acting on a protein kinase activity protein kinase activity transferase activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups histone H3 kinase activity histone modifying activity catalytic activity histone kinase activity pyrophosphatase activity GTPase activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides histone H3S57 kinase activity clathrin binding guanyl nucleotide binding GTP binding guanyl ribonucleotide binding cation binding magnesium ion binding metal ion binding histone H3T11 kinase activity ribosomal protein S6 kinase activity histone H3S10 kinase activity enzyme regulator activity molecular function activator activity nucleoside-triphosphatase regulator activity GTPase regulator activity enzyme activator activity GTPase activator activity molecular function regulator activity histone H3T45 kinase activity peroxidase activity oxidoreductase activity molecular function inhibitor activity antioxidant activity oxidoreductase activity, acting on peroxide as acceptor peroxidase inhibitor activity enzyme inhibitor activity histone H3T3 kinase activity protein kinase A binding identical protein binding histone H2AXS139 kinase activity histone H2AX kinase activity protein serine kinase activity SNARE binding actin binding 3-phosphoinositide-dependent protein kinase activity protein-containing complex binding beta-catenin destruction complex binding DNA-dependent protein kinase activity JUN kinase kinase kinase activity MAP kinase kinase kinase activity syntaxin-1 binding syntaxin binding GTPase motor activity cytoskeletal motor activity membrane scission GTPase motor activity histone H4S1 kinase activity histone H4 kinase activity GTP-dependent protein kinase activity protein homodimerization activity protein dimerization activity co-receptor binding histone H3S28 kinase activity histone H2B kinase activity histone H2BS36 kinase activity small GTPase binding enzyme binding GTPase binding histone H2AS121 kinase activity histone H2A kinase activity AMP-activated protein kinase activity eukaryotic translation initiation factor 2alpha kinase activity histone H2BS14 kinase activity Rho-dependent protein serine/threonine kinase activity histone H2AT120 kinase activity transmembrane transporter binding histone H2AS1 kinase activity signaling receptor complex adaptor activity protein-macromolecule adaptor activity molecular adaptor activity signaling adaptor activity	cellular response to stimulus regulation of biological process regulation of signaling regulation of cellular process cell surface receptor signaling pathway response to stimulus regulation of Wnt signaling pathway signaling regulation of canonical Wnt signaling pathway canonical Wnt signaling pathway biological regulation regulation of signal transduction cell communication regulation of response to stimulus cellular response to stimulus regulation of biological process regulation of signaling regulation of cellular process cell surface receptor signaling pathway response to stimulus regulation of Wnt signaling pathway signaling regulation of canonical Wnt signaling pathway canonical Wnt signaling pathway biological regulation regulation of signal transduction cell communication regulation of response to stimulus regulation of cell communication cellular process signal transduction Wnt signaling pathway intracellular signal transduction regulation of CAMKK-AMPK signaling cascade calcium-mediated signaling regulation of intracellular signal transduction intracellular signaling cassette regulation of calcium-mediated signaling CAMKK-AMPK signaling cascade regulation of localization import into cell cellular localization regulation of cellular component organization transport synaptic vesicle cycle regulation of synaptic vesicle recycling vesicle-mediated transport presynaptic endocytosis vesicle-mediated transport in synapse cellular component organization localization synaptic vesicle recycling regulation of synaptic vesicle endocytosis establishment of localization in cell cellular component organization or biogenesis regulation of endocytosis synaptic vesicle endocytosis regulation of transport regulation of vesicle-mediated transport establishment of localization endocytosis response to oxidative stress cellular response to chemical stimulus cellular response to stress response to stress response to chemical cellular response to oxidative stress cellular response to chemical stress cellular response to nutrient levels response to nutrient levels response to starvation cellular response to starvation regulation of biological quality regulation of membrane potential developmental process regulation of morphogenesis of a branching structure multicellular organismal process regulation of developmental process nervous system development regulation of branching morphogenesis of a nerve anatomical structure morphogenesis multicellular organism development morphogenesis of a branching structure anatomical structure development branching morphogenesis of a nerve regulation of multicellular organismal process regulation of anatomical structure morphogenesis system development nucleoside phosphate metabolic process ribose phosphate metabolic process purine nucleoside triphosphate metabolic process GTP metabolic process carbohydrate derivative metabolic process primary metabolic process nucleotide metabolic process purine-containing compound metabolic process nucleobase-containing compound metabolic process purine nucleotide metabolic process ribonucleotide metabolic process organophosphate metabolic process nucleobase-containing small molecule metabolic process purine ribonucleoside triphosphate metabolic process phosphate-containing compound metabolic process metabolic process small molecule metabolic process nucleoside triphosphate metabolic process purine ribonucleotide metabolic process phosphorus metabolic process ribonucleoside triphosphate metabolic process regulation of protein binding positive regulation of molecular function regulation of molecular function positive regulation of protein binding regulation of binding positive regulation of binding intracellular transport endosomal transport regulation of cellular localization cytosolic transport retrograde transport, endosome to Golgi regulation of retrograde transport, endosome to Golgi regulation of intracellular transport regulation of protein modification process positive regulation of protein metabolic process positive regulation of biological process regulation of protein ubiquitination positive regulation of post-translational protein modification regulation of primary metabolic process positive regulation of metabolic process positive regulation of protein modification process protein ubiquitination positive regulation of macromolecule metabolic process protein metabolic process regulation of protein modification by small protein conjugation or removal protein modification process positive regulation of cellular process positive regulation of protein modification by small protein conjugation or removal positive regulation of protein ubiquitination regulation of post-translational protein modification regulation of protein metabolic process regulation of macromolecule metabolic process macromolecule modification macromolecule metabolic process post-translational protein modification regulation of metabolic process protein modification by small protein conjugation protein modification by small protein conjugation or removal cellular response to metal ion response to metal ion cellular response to manganese ion response to manganese ion behavior locomotory behavior exploration behavior locomotory exploration behavior organelle organization endoplasmic reticulum organization endomembrane system organization regulation of tumor necrosis factor production positive regulation of macromolecule biosynthetic process positive regulation of tumor necrosis factor superfamily cytokine production positive regulation of biosynthetic process cytokine production regulation of cytokine production regulation of biosynthetic process tumor necrosis factor superfamily cytokine production positive regulation of tumor necrosis factor production gene expression macromolecule biosynthetic process tumor necrosis factor production regulation of gene expression regulation of tumor necrosis factor superfamily cytokine production biosynthetic process positive regulation of gene expression positive regulation of multicellular organismal process regulation of macromolecule biosynthetic process positive regulation of cytokine production cell projection organization regulation of cell projection organization protein phosphorylation phosphorylation peptidyl-amino acid modification peptidyl-threonine modification peptidyl-threonine phosphorylation regulation of neuron projection development cellular developmental process negative regulation of biological process cell development neuron projection development neurogenesis neuron differentiation cell differentiation negative regulation of cellular process negative regulation of cell projection organization plasma membrane bounded cell projection organization negative regulation of cellular component organization negative regulation of neuron projection development generation of neurons neuron development regulation of plasma membrane bounded cell projection organization negative regulation of hydrolase activity negative regulation of GTPase activity regulation of catalytic activity negative regulation of molecular function negative regulation of catalytic activity regulation of GTPase activity regulation of hydrolase activity protein autophosphorylation MAPK cascade regulation of macrophage activation regulation of defense response positive regulation of macrophage activation regulation of response to external stimulus regulation of leukocyte activation positive regulation of microglial cell activation regulation of cell activation positive regulation of neuroinflammatory response myeloid leukocyte activation leukocyte activation positive regulation of response to stimulus macrophage activation positive regulation of cell activation positive regulation of response to external stimulus positive regulation of inflammatory response regulation of response to stress leukocyte activation involved in inflammatory response regulation of neuroinflammatory response positive regulation of leukocyte activation regulation of immune system process positive regulation of immune system process defense response cell activation response to external stimulus regulation of inflammatory response immune system process positive regulation of defense response microglial cell activation inflammatory response glial cell activation regulation of microglial cell activation neuroinflammatory response regulation of protein stability vacuole organization lytic vacuole organization homeostatic process regulation of intracellular pH lysosome organization cellular homeostasis chemical homeostasis intracellular monoatomic cation homeostasis regulation of pH monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis regulation of lysosomal lumen pH regulation of cellular pH intracellular monoatomic ion homeostasis protein localization negative regulation of establishment of protein localization to mitochondrion establishment of protein localization regulation of protein localization protein targeting regulation of protein targeting to mitochondrion cellular macromolecule localization negative regulation of protein localization negative regulation of protein targeting to mitochondrion regulation of establishment of protein localization negative regulation of establishment of protein localization regulation of establishment of protein localization to mitochondrion establishment of protein localization to organelle regulation of protein targeting macromolecule localization protein localization to organelle protein localization to mitochondrion protein targeting to mitochondrion establishment of protein localization to mitochondrion positive regulation of phosphorylation regulation of protein phosphorylation positive regulation of phosphate metabolic process regulation of phosphate metabolic process positive regulation of protein phosphorylation positive regulation of phosphorus metabolic process regulation of phosphorus metabolic process regulation of phosphorylation trans-synaptic signaling modulation of chemical synaptic transmission synaptic transmission, glutamatergic cell-cell signaling regulation of synaptic transmission, glutamatergic chemical synaptic transmission synaptic signaling regulation of trans-synaptic signaling anterograde trans-synaptic signaling plasma membrane bounded cell projection morphogenesis cell morphogenesis cell projection morphogenesis neuron projection morphogenesis neuron projection arborization catabolic process autophagy regulation of catabolic process regulation of autophagy process utilizing autophagic mechanism reactive oxygen species metabolic process regulation of reactive oxygen species metabolic process mitochondrion organization neuroblast proliferation cell population proliferation regulation of neuroblast proliferation regulation of cell population proliferation neural precursor cell proliferation regulation of neural precursor cell proliferation head development forebrain development olfactory lobe development animal organ development brain development tangential migration from the subventricular zone to the olfactory bulb telencephalon cell migration central nervous system development forebrain cell migration cell migration telencephalon development cell motility olfactory bulb development negative regulation of protein binding negative regulation of binding negative regulation of thioredoxin peroxidase activity by peptidyl-threonine phosphorylation organelle fission mitochondrial fission regulation of organelle organization regulation of mitochondrial fission regulation of mitochondrion organization positive regulation of proteasomal protein catabolic process proteolysis involved in protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process regulation of ubiquitin-dependent protein catabolic process positive regulation of ubiquitin-dependent protein catabolic process regulation of proteolysis regulation of proteolysis involved in protein catabolic process modification-dependent macromolecule catabolic process proteolysis proteasomal protein catabolic process protein catabolic process positive regulation of protein catabolic process positive regulation of proteolysis involved in protein catabolic process positive regulation of catabolic process regulation of proteasomal ubiquitin-dependent protein catabolic process modification-dependent protein catabolic process positive regulation of proteolysis regulation of proteasomal protein catabolic process positive regulation of proteasomal ubiquitin-dependent protein catabolic process ubiquitin-dependent protein catabolic process regulation of protein catabolic process regulation of cAMP/PKA signal transduction cAMP/PKA signal transduction cellular response to nitrogen compound response to dopamine cellular response to dopamine response to monoamine regulation of dopamine receptor signaling pathway response to catecholamine cellular response to catecholamine stimulus regulation of G protein-coupled receptor signaling pathway G protein-coupled dopamine receptor signaling pathway response to oxygen-containing compound response to nitrogen compound cellular response to oxygen-containing compound cellular response to monoamine stimulus G protein-coupled receptor signaling pathway JNK cascade regulation of ER to Golgi vesicle-mediated transport endoplasmic reticulum to Golgi vesicle-mediated transport Golgi vesicle transport regulation of transferase activity positive regulation of protein kinase activity positive regulation of transferase activity positive regulation of catalytic activity regulation of protein kinase activity positive regulation of kinase activity regulation of kinase activity small GTPase-mediated signal transduction Rho protein signal transduction positive regulation of autophagy regulation of synapse structure or activity synapse organization dendritic spine morphogenesis dendritic spine development postsynapse organization dendritic spine organization regulation of postsynapse organization dendrite development dendrite morphogenesis cell morphogenesis involved in neuron differentiation regulation of synapse organization cell junction organization regulation of dendritic spine morphogenesis neuron projection organization negative regulation of signaling negative regulation of intracellular signal transduction regulation of cellular response to stress regulation of response to endoplasmic reticulum stress negative regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway regulation of programmed cell death intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress regulation of intrinsic apoptotic signaling pathway negative regulation of cell communication regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway negative regulation of apoptotic signaling pathway intrinsic apoptotic signaling pathway response to endoplasmic reticulum stress negative regulation of response to endoplasmic reticulum stress negative regulation of response to stimulus negative regulation of programmed cell death regulation of apoptotic process cell death negative regulation of signal transduction apoptotic signaling pathway negative regulation of intrinsic apoptotic signaling pathway negative regulation of apoptotic process apoptotic process programmed cell death regulation of apoptotic signaling pathway regulation of protein autoubiquitination protein autoubiquitination positive regulation of protein autoubiquitination Notch signaling pathway negative regulation of Notch signaling pathway regulation of Notch signaling pathway regulation of postsynaptic membrane potential system process chemical synaptic transmission, postsynaptic nervous system process excitatory postsynaptic potential positive regulation of cell communication positive regulation of signal transduction regulation of MAP kinase activity positive regulation of protein serine/threonine kinase activity positive regulation of MAP kinase activity positive regulation of MAPK cascade positive regulation of intracellular signal transduction regulation of MAPK cascade regulation of protein serine/threonine kinase activity positive regulation of signaling mitochondrion localization organelle localization regulation of protein maturation negative regulation of proteolysis negative regulation of protein maturation protein maturation negative regulation of protein metabolic process negative regulation of macromolecule metabolic process negative regulation of metabolic process negative regulation of gene expression negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process regulation of protein processing protein processing negative regulation of protein processing positive regulation of programmed cell death macroautophagy negative regulation of organelle assembly autophagosome organization cellular component biogenesis cellular component assembly negative regulation of autophagosome assembly negative regulation of catabolic process autophagosome assembly organelle assembly regulation of autophagosome assembly regulation of vacuole organization regulation of cellular component biogenesis negative regulation of macroautophagy regulation of macroautophagy negative regulation of organelle organization negative regulation of autophagy regulation of organelle assembly positive regulation of G protein-coupled receptor signaling pathway positive regulation of dopamine receptor signaling pathway positive regulation of Wnt signaling pathway positive regulation of canonical Wnt signaling pathway positive regulation of cellular component organization positive regulation of synaptic vesicle recycling positive regulation of endocytosis positive regulation of synaptic vesicle endocytosis positive regulation of transport Golgi organization regulation of cell differentiation regulation of neuron maturation regulation of cell development cell maturation regulation of cell maturation developmental maturation anatomical structure maturation neuron maturation regulation of neuron differentiation spermatogenesis sexual reproduction reproductive process multicellular organismal reproductive process developmental process involved in reproduction male gamete generation gamete generation Wnt signalosome assembly protein-containing complex organization protein-containing complex assembly nitrogen compound transport nucleocytoplasmic transport nuclear transport protein localization to nucleus import into nucleus protein transport protein import into nucleus intracellular protein transport regulation of kidney size renal system development kidney morphogenesis animal organ morphogenesis kidney development regulation of anatomical structure size vesicle localization establishment of organelle localization establishment of vesicle localization regulation of synaptic vesicle transport synaptic vesicle localization synaptic vesicle transport peptidyl-serine modification peptidyl-serine phosphorylation protein processing involved in protein targeting to mitochondrion regulation of protein processing involved in protein targeting to mitochondrion negative regulation of protein processing involved in protein targeting to mitochondrion mitochondrial protein processing striatum development subpallium development regulated exocytosis synaptic vesicle exocytosis regulation of regulated secretory pathway regulation of secretion by cell secretion by cell signal release neurotransmitter secretion secretion regulation of neurotransmitter transport regulation of synaptic vesicle exocytosis export from cell neurotransmitter transport regulation of secretion signal release from synapse exocytosis regulation of neurotransmitter secretion regulation of exocytosis mitochondrion distribution intracellular distribution of mitochondria neuromuscular junction development regulation of mitochondrial depolarization mitochondrial depolarization regulation of membrane depolarization regulation of mitochondrial membrane potential membrane depolarization determination of adult lifespan protein localization to endoplasmic reticulum exit site protein localization to endoplasmic reticulum response to reactive oxygen species cellular response to reactive oxygen species late endosome to lysosome transport negative regulation of transport lysosomal transport negative regulation of late endosome to lysosome transport negative regulation of intracellular transport negative regulation of vacuolar transport regulation of vacuolar transport vacuolar transport regulation of late endosome to lysosome transport regulation of system process modulation of excitatory postsynaptic potential regulation of nervous system process negative regulation of excitatory postsynaptic potential regulation of locomotion locomotion	membrane-bounded organelle intracellular organelle amphisome cellular anatomical structure intracellular anatomical structure organelle vacuole autophagosome cytoplasm intracellular membrane-bounded organelle extracellular region extracellular space mitochondrial membrane organelle inner membrane membrane-bounded organelle intracellular organelle amphisome cellular anatomical structure intracellular anatomical structure organelle vacuole autophagosome cytoplasm intracellular membrane-bounded organelle extracellular region extracellular space mitochondrial membrane organelle inner membrane mitochondrion membrane mitochondrial inner membrane organelle envelope mitochondrial envelope organelle membrane cytosolic region presynapse presynaptic cytosol synapse cell junction cytosol cell periphery plasma membrane organelle subcompartment endomembrane system endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum endoplasmic reticulum membrane endosome intracellular vesicle cytoplasmic vesicle vesicle membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen organelle lumen multivesicular body, internal vesicle late endosome multivesicular body extracellular exosome extracellular vesicle extracellular organelle extracellular membrane-bounded organelle somatodendritic compartment cell projection dendrite dendritic tree neuron projection plasma membrane bounded cell projection glutamatergic synapse Golgi apparatus subcompartment Golgi apparatus trans-Golgi network cytoskeleton membraneless organelle intracellular membraneless organelle cell body neuronal cell body transport vesicle membrane bounding membrane of organelle vesicle membrane synaptic vesicle synaptic vesicle membrane transport vesicle exocytic vesicle membrane cytoplasmic vesicle membrane secretory vesicle exocytic vesicle perikaryon Golgi membrane membrane microdomain membrane raft caveola neck plasma membrane raft plasma membrane region caveola autolysosome lytic vacuole secondary lysosome lysosome phagocytic vesicle endocytic vesicle neuron projection cytoplasm cytoplasmic region plasma membrane bounded cell projection cytoplasm dendrite cytoplasm protein-containing complex ribonucleoprotein complex endoplasmic reticulum exit site actin-based cell projection microvillus organelle outer membrane mitochondrial outer membrane outer membrane axon postsynapse axon terminus distal axon terminal bouton neuron projection terminus Golgi-associated vesicle cytoplasmic side of membrane cytoplasmic side of mitochondrial outer membrane side of membrane growth cone site of polarized growth Wnt signalosome
C	Leucine-rich repeat serine/threonine-protein kinase 2	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding cytoskeletal protein binding microtubule binding protein binding tubulin binding protein serine/threonine kinase activity histone H3T6 kinase activity catalytic activity, acting on a protein kinase activity protein kinase activity transferase activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups histone H3 kinase activity histone modifying activity catalytic activity histone kinase activity pyrophosphatase activity GTPase activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides histone H3S57 kinase activity clathrin binding guanyl nucleotide binding GTP binding guanyl ribonucleotide binding cation binding magnesium ion binding metal ion binding histone H3T11 kinase activity ribosomal protein S6 kinase activity histone H3S10 kinase activity enzyme regulator activity molecular function activator activity nucleoside-triphosphatase regulator activity GTPase regulator activity enzyme activator activity GTPase activator activity molecular function regulator activity histone H3T45 kinase activity peroxidase activity oxidoreductase activity molecular function inhibitor activity antioxidant activity oxidoreductase activity, acting on peroxide as acceptor peroxidase inhibitor activity enzyme inhibitor activity histone H3T3 kinase activity protein kinase A binding identical protein binding histone H2AXS139 kinase activity histone H2AX kinase activity protein serine kinase activity SNARE binding actin binding 3-phosphoinositide-dependent protein kinase activity protein-containing complex binding beta-catenin destruction complex binding DNA-dependent protein kinase activity JUN kinase kinase kinase activity MAP kinase kinase kinase activity syntaxin-1 binding syntaxin binding GTPase motor activity cytoskeletal motor activity membrane scission GTPase motor activity histone H4S1 kinase activity histone H4 kinase activity GTP-dependent protein kinase activity protein homodimerization activity protein dimerization activity co-receptor binding histone H3S28 kinase activity histone H2B kinase activity histone H2BS36 kinase activity small GTPase binding enzyme binding GTPase binding histone H2AS121 kinase activity histone H2A kinase activity AMP-activated protein kinase activity eukaryotic translation initiation factor 2alpha kinase activity histone H2BS14 kinase activity Rho-dependent protein serine/threonine kinase activity histone H2AT120 kinase activity transmembrane transporter binding histone H2AS1 kinase activity signaling receptor complex adaptor activity protein-macromolecule adaptor activity molecular adaptor activity signaling adaptor activity	cellular response to stimulus regulation of biological process regulation of signaling regulation of cellular process cell surface receptor signaling pathway response to stimulus regulation of Wnt signaling pathway signaling regulation of canonical Wnt signaling pathway canonical Wnt signaling pathway biological regulation regulation of signal transduction cell communication regulation of response to stimulus cellular response to stimulus regulation of biological process regulation of signaling regulation of cellular process cell surface receptor signaling pathway response to stimulus regulation of Wnt signaling pathway signaling regulation of canonical Wnt signaling pathway canonical Wnt signaling pathway biological regulation regulation of signal transduction cell communication regulation of response to stimulus regulation of cell communication cellular process signal transduction Wnt signaling pathway intracellular signal transduction regulation of CAMKK-AMPK signaling cascade calcium-mediated signaling regulation of intracellular signal transduction intracellular signaling cassette regulation of calcium-mediated signaling CAMKK-AMPK signaling cascade regulation of localization import into cell cellular localization regulation of cellular component organization transport synaptic vesicle cycle regulation of synaptic vesicle recycling vesicle-mediated transport presynaptic endocytosis vesicle-mediated transport in synapse cellular component organization localization synaptic vesicle recycling regulation of synaptic vesicle endocytosis establishment of localization in cell cellular component organization or biogenesis regulation of endocytosis synaptic vesicle endocytosis regulation of transport regulation of vesicle-mediated transport establishment of localization endocytosis response to oxidative stress cellular response to chemical stimulus cellular response to stress response to stress response to chemical cellular response to oxidative stress cellular response to chemical stress cellular response to nutrient levels response to nutrient levels response to starvation cellular response to starvation regulation of biological quality regulation of membrane potential developmental process regulation of morphogenesis of a branching structure multicellular organismal process regulation of developmental process nervous system development regulation of branching morphogenesis of a nerve anatomical structure morphogenesis multicellular organism development morphogenesis of a branching structure anatomical structure development branching morphogenesis of a nerve regulation of multicellular organismal process regulation of anatomical structure morphogenesis system development nucleoside phosphate metabolic process ribose phosphate metabolic process purine nucleoside triphosphate metabolic process GTP metabolic process carbohydrate derivative metabolic process primary metabolic process nucleotide metabolic process purine-containing compound metabolic process nucleobase-containing compound metabolic process purine nucleotide metabolic process ribonucleotide metabolic process organophosphate metabolic process nucleobase-containing small molecule metabolic process purine ribonucleoside triphosphate metabolic process phosphate-containing compound metabolic process metabolic process small molecule metabolic process nucleoside triphosphate metabolic process purine ribonucleotide metabolic process phosphorus metabolic process ribonucleoside triphosphate metabolic process regulation of protein binding positive regulation of molecular function regulation of molecular function positive regulation of protein binding regulation of binding positive regulation of binding intracellular transport endosomal transport regulation of cellular localization cytosolic transport retrograde transport, endosome to Golgi regulation of retrograde transport, endosome to Golgi regulation of intracellular transport regulation of protein modification process positive regulation of protein metabolic process positive regulation of biological process regulation of protein ubiquitination positive regulation of post-translational protein modification regulation of primary metabolic process positive regulation of metabolic process positive regulation of protein modification process protein ubiquitination positive regulation of macromolecule metabolic process protein metabolic process regulation of protein modification by small protein conjugation or removal protein modification process positive regulation of cellular process positive regulation of protein modification by small protein conjugation or removal positive regulation of protein ubiquitination regulation of post-translational protein modification regulation of protein metabolic process regulation of macromolecule metabolic process macromolecule modification macromolecule metabolic process post-translational protein modification regulation of metabolic process protein modification by small protein conjugation protein modification by small protein conjugation or removal cellular response to metal ion response to metal ion cellular response to manganese ion response to manganese ion behavior locomotory behavior exploration behavior locomotory exploration behavior organelle organization endoplasmic reticulum organization endomembrane system organization regulation of tumor necrosis factor production positive regulation of macromolecule biosynthetic process positive regulation of tumor necrosis factor superfamily cytokine production positive regulation of biosynthetic process cytokine production regulation of cytokine production regulation of biosynthetic process tumor necrosis factor superfamily cytokine production positive regulation of tumor necrosis factor production gene expression macromolecule biosynthetic process tumor necrosis factor production regulation of gene expression regulation of tumor necrosis factor superfamily cytokine production biosynthetic process positive regulation of gene expression positive regulation of multicellular organismal process regulation of macromolecule biosynthetic process positive regulation of cytokine production cell projection organization regulation of cell projection organization protein phosphorylation phosphorylation peptidyl-amino acid modification peptidyl-threonine modification peptidyl-threonine phosphorylation regulation of neuron projection development cellular developmental process negative regulation of biological process cell development neuron projection development neurogenesis neuron differentiation cell differentiation negative regulation of cellular process negative regulation of cell projection organization plasma membrane bounded cell projection organization negative regulation of cellular component organization negative regulation of neuron projection development generation of neurons neuron development regulation of plasma membrane bounded cell projection organization negative regulation of hydrolase activity negative regulation of GTPase activity regulation of catalytic activity negative regulation of molecular function negative regulation of catalytic activity regulation of GTPase activity regulation of hydrolase activity protein autophosphorylation MAPK cascade regulation of macrophage activation regulation of defense response positive regulation of macrophage activation regulation of response to external stimulus regulation of leukocyte activation positive regulation of microglial cell activation regulation of cell activation positive regulation of neuroinflammatory response myeloid leukocyte activation leukocyte activation positive regulation of response to stimulus macrophage activation positive regulation of cell activation positive regulation of response to external stimulus positive regulation of inflammatory response regulation of response to stress leukocyte activation involved in inflammatory response regulation of neuroinflammatory response positive regulation of leukocyte activation regulation of immune system process positive regulation of immune system process defense response cell activation response to external stimulus regulation of inflammatory response immune system process positive regulation of defense response microglial cell activation inflammatory response glial cell activation regulation of microglial cell activation neuroinflammatory response regulation of protein stability vacuole organization lytic vacuole organization homeostatic process regulation of intracellular pH lysosome organization cellular homeostasis chemical homeostasis intracellular monoatomic cation homeostasis regulation of pH monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis regulation of lysosomal lumen pH regulation of cellular pH intracellular monoatomic ion homeostasis protein localization negative regulation of establishment of protein localization to mitochondrion establishment of protein localization regulation of protein localization protein targeting regulation of protein targeting to mitochondrion cellular macromolecule localization negative regulation of protein localization negative regulation of protein targeting to mitochondrion regulation of establishment of protein localization negative regulation of establishment of protein localization regulation of establishment of protein localization to mitochondrion establishment of protein localization to organelle regulation of protein targeting macromolecule localization protein localization to organelle protein localization to mitochondrion protein targeting to mitochondrion establishment of protein localization to mitochondrion positive regulation of phosphorylation regulation of protein phosphorylation positive regulation of phosphate metabolic process regulation of phosphate metabolic process positive regulation of protein phosphorylation positive regulation of phosphorus metabolic process regulation of phosphorus metabolic process regulation of phosphorylation trans-synaptic signaling modulation of chemical synaptic transmission synaptic transmission, glutamatergic cell-cell signaling regulation of synaptic transmission, glutamatergic chemical synaptic transmission synaptic signaling regulation of trans-synaptic signaling anterograde trans-synaptic signaling plasma membrane bounded cell projection morphogenesis cell morphogenesis cell projection morphogenesis neuron projection morphogenesis neuron projection arborization catabolic process autophagy regulation of catabolic process regulation of autophagy process utilizing autophagic mechanism reactive oxygen species metabolic process regulation of reactive oxygen species metabolic process mitochondrion organization neuroblast proliferation cell population proliferation regulation of neuroblast proliferation regulation of cell population proliferation neural precursor cell proliferation regulation of neural precursor cell proliferation head development forebrain development olfactory lobe development animal organ development brain development tangential migration from the subventricular zone to the olfactory bulb telencephalon cell migration central nervous system development forebrain cell migration cell migration telencephalon development cell motility olfactory bulb development negative regulation of protein binding negative regulation of binding negative regulation of thioredoxin peroxidase activity by peptidyl-threonine phosphorylation organelle fission mitochondrial fission regulation of organelle organization regulation of mitochondrial fission regulation of mitochondrion organization positive regulation of proteasomal protein catabolic process proteolysis involved in protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process regulation of ubiquitin-dependent protein catabolic process positive regulation of ubiquitin-dependent protein catabolic process regulation of proteolysis regulation of proteolysis involved in protein catabolic process modification-dependent macromolecule catabolic process proteolysis proteasomal protein catabolic process protein catabolic process positive regulation of protein catabolic process positive regulation of proteolysis involved in protein catabolic process positive regulation of catabolic process regulation of proteasomal ubiquitin-dependent protein catabolic process modification-dependent protein catabolic process positive regulation of proteolysis regulation of proteasomal protein catabolic process positive regulation of proteasomal ubiquitin-dependent protein catabolic process ubiquitin-dependent protein catabolic process regulation of protein catabolic process regulation of cAMP/PKA signal transduction cAMP/PKA signal transduction cellular response to nitrogen compound response to dopamine cellular response to dopamine response to monoamine regulation of dopamine receptor signaling pathway response to catecholamine cellular response to catecholamine stimulus regulation of G protein-coupled receptor signaling pathway G protein-coupled dopamine receptor signaling pathway response to oxygen-containing compound response to nitrogen compound cellular response to oxygen-containing compound cellular response to monoamine stimulus G protein-coupled receptor signaling pathway JNK cascade regulation of ER to Golgi vesicle-mediated transport endoplasmic reticulum to Golgi vesicle-mediated transport Golgi vesicle transport regulation of transferase activity positive regulation of protein kinase activity positive regulation of transferase activity positive regulation of catalytic activity regulation of protein kinase activity positive regulation of kinase activity regulation of kinase activity small GTPase-mediated signal transduction Rho protein signal transduction positive regulation of autophagy regulation of synapse structure or activity synapse organization dendritic spine morphogenesis dendritic spine development postsynapse organization dendritic spine organization regulation of postsynapse organization dendrite development dendrite morphogenesis cell morphogenesis involved in neuron differentiation regulation of synapse organization cell junction organization regulation of dendritic spine morphogenesis neuron projection organization negative regulation of signaling negative regulation of intracellular signal transduction regulation of cellular response to stress regulation of response to endoplasmic reticulum stress negative regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway regulation of programmed cell death intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress regulation of intrinsic apoptotic signaling pathway negative regulation of cell communication regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway negative regulation of apoptotic signaling pathway intrinsic apoptotic signaling pathway response to endoplasmic reticulum stress negative regulation of response to endoplasmic reticulum stress negative regulation of response to stimulus negative regulation of programmed cell death regulation of apoptotic process cell death negative regulation of signal transduction apoptotic signaling pathway negative regulation of intrinsic apoptotic signaling pathway negative regulation of apoptotic process apoptotic process programmed cell death regulation of apoptotic signaling pathway regulation of protein autoubiquitination protein autoubiquitination positive regulation of protein autoubiquitination Notch signaling pathway negative regulation of Notch signaling pathway regulation of Notch signaling pathway regulation of postsynaptic membrane potential system process chemical synaptic transmission, postsynaptic nervous system process excitatory postsynaptic potential positive regulation of cell communication positive regulation of signal transduction regulation of MAP kinase activity positive regulation of protein serine/threonine kinase activity positive regulation of MAP kinase activity positive regulation of MAPK cascade positive regulation of intracellular signal transduction regulation of MAPK cascade regulation of protein serine/threonine kinase activity positive regulation of signaling mitochondrion localization organelle localization regulation of protein maturation negative regulation of proteolysis negative regulation of protein maturation protein maturation negative regulation of protein metabolic process negative regulation of macromolecule metabolic process negative regulation of metabolic process negative regulation of gene expression negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process regulation of protein processing protein processing negative regulation of protein processing positive regulation of programmed cell death macroautophagy negative regulation of organelle assembly autophagosome organization cellular component biogenesis cellular component assembly negative regulation of autophagosome assembly negative regulation of catabolic process autophagosome assembly organelle assembly regulation of autophagosome assembly regulation of vacuole organization regulation of cellular component biogenesis negative regulation of macroautophagy regulation of macroautophagy negative regulation of organelle organization negative regulation of autophagy regulation of organelle assembly positive regulation of G protein-coupled receptor signaling pathway positive regulation of dopamine receptor signaling pathway positive regulation of Wnt signaling pathway positive regulation of canonical Wnt signaling pathway positive regulation of cellular component organization positive regulation of synaptic vesicle recycling positive regulation of endocytosis positive regulation of synaptic vesicle endocytosis positive regulation of transport Golgi organization regulation of cell differentiation regulation of neuron maturation regulation of cell development cell maturation regulation of cell maturation developmental maturation anatomical structure maturation neuron maturation regulation of neuron differentiation spermatogenesis sexual reproduction reproductive process multicellular organismal reproductive process developmental process involved in reproduction male gamete generation gamete generation Wnt signalosome assembly protein-containing complex organization protein-containing complex assembly nitrogen compound transport nucleocytoplasmic transport nuclear transport protein localization to nucleus import into nucleus protein transport protein import into nucleus intracellular protein transport regulation of kidney size renal system development kidney morphogenesis animal organ morphogenesis kidney development regulation of anatomical structure size vesicle localization establishment of organelle localization establishment of vesicle localization regulation of synaptic vesicle transport synaptic vesicle localization synaptic vesicle transport peptidyl-serine modification peptidyl-serine phosphorylation protein processing involved in protein targeting to mitochondrion regulation of protein processing involved in protein targeting to mitochondrion negative regulation of protein processing involved in protein targeting to mitochondrion mitochondrial protein processing striatum development subpallium development regulated exocytosis synaptic vesicle exocytosis regulation of regulated secretory pathway regulation of secretion by cell secretion by cell signal release neurotransmitter secretion secretion regulation of neurotransmitter transport regulation of synaptic vesicle exocytosis export from cell neurotransmitter transport regulation of secretion signal release from synapse exocytosis regulation of neurotransmitter secretion regulation of exocytosis mitochondrion distribution intracellular distribution of mitochondria neuromuscular junction development regulation of mitochondrial depolarization mitochondrial depolarization regulation of membrane depolarization regulation of mitochondrial membrane potential membrane depolarization determination of adult lifespan protein localization to endoplasmic reticulum exit site protein localization to endoplasmic reticulum response to reactive oxygen species cellular response to reactive oxygen species late endosome to lysosome transport negative regulation of transport lysosomal transport negative regulation of late endosome to lysosome transport negative regulation of intracellular transport negative regulation of vacuolar transport regulation of vacuolar transport vacuolar transport regulation of late endosome to lysosome transport regulation of system process modulation of excitatory postsynaptic potential regulation of nervous system process negative regulation of excitatory postsynaptic potential regulation of locomotion locomotion	membrane-bounded organelle intracellular organelle amphisome cellular anatomical structure intracellular anatomical structure organelle vacuole autophagosome cytoplasm intracellular membrane-bounded organelle extracellular region extracellular space mitochondrial membrane organelle inner membrane membrane-bounded organelle intracellular organelle amphisome cellular anatomical structure intracellular anatomical structure organelle vacuole autophagosome cytoplasm intracellular membrane-bounded organelle extracellular region extracellular space mitochondrial membrane organelle inner membrane mitochondrion membrane mitochondrial inner membrane organelle envelope mitochondrial envelope organelle membrane cytosolic region presynapse presynaptic cytosol synapse cell junction cytosol cell periphery plasma membrane organelle subcompartment endomembrane system endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum endoplasmic reticulum membrane endosome intracellular vesicle cytoplasmic vesicle vesicle membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen organelle lumen multivesicular body, internal vesicle late endosome multivesicular body extracellular exosome extracellular vesicle extracellular organelle extracellular membrane-bounded organelle somatodendritic compartment cell projection dendrite dendritic tree neuron projection plasma membrane bounded cell projection glutamatergic synapse Golgi apparatus subcompartment Golgi apparatus trans-Golgi network cytoskeleton membraneless organelle intracellular membraneless organelle cell body neuronal cell body transport vesicle membrane bounding membrane of organelle vesicle membrane synaptic vesicle synaptic vesicle membrane transport vesicle exocytic vesicle membrane cytoplasmic vesicle membrane secretory vesicle exocytic vesicle perikaryon Golgi membrane membrane microdomain membrane raft caveola neck plasma membrane raft plasma membrane region caveola autolysosome lytic vacuole secondary lysosome lysosome phagocytic vesicle endocytic vesicle neuron projection cytoplasm cytoplasmic region plasma membrane bounded cell projection cytoplasm dendrite cytoplasm protein-containing complex ribonucleoprotein complex endoplasmic reticulum exit site actin-based cell projection microvillus organelle outer membrane mitochondrial outer membrane outer membrane axon postsynapse axon terminus distal axon terminal bouton neuron projection terminus Golgi-associated vesicle cytoplasmic side of membrane cytoplasmic side of mitochondrial outer membrane side of membrane growth cone site of polarized growth Wnt signalosome

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR016024	Armadillo-type fold	Homologous Superfamily
A	IPR020859	Roc domain	Domain
A	IPR017441	Protein kinase, ATP binding site	Binding Site
A	IPR036770	Ankyrin repeat-containing domain superfamily	Homologous Superfamily
A	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
A	IPR032675	Leucine-rich repeat domain superfamily	Homologous Superfamily
A	IPR008271	Serine/threonine-protein kinase, active site	Active Site
A	IPR051420	Ser/Thr Protein Kinases with Diverse Regulatory Roles	Family
A	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A	IPR001611	Leucine-rich repeat	Repeat
A	IPR003591	Leucine-rich repeat, typical subtype	Repeat
A	IPR011989	Armadillo-like helical	Homologous Superfamily
A	IPR005225	Small GTP-binding domain	Domain
A	IPR000719	Protein kinase domain	Domain
A	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
A	IPR032171	C-terminal of Roc (COR) domain	Domain
A	IPR011009	Protein kinase-like domain superfamily	Homologous Superfamily
B	IPR016024	Armadillo-type fold	Homologous Superfamily
B	IPR020859	Roc domain	Domain
B	IPR017441	Protein kinase, ATP binding site	Binding Site
B	IPR036770	Ankyrin repeat-containing domain superfamily	Homologous Superfamily
B	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
B	IPR032675	Leucine-rich repeat domain superfamily	Homologous Superfamily
B	IPR008271	Serine/threonine-protein kinase, active site	Active Site
B	IPR051420	Ser/Thr Protein Kinases with Diverse Regulatory Roles	Family
B	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
B	IPR001611	Leucine-rich repeat	Repeat
B	IPR003591	Leucine-rich repeat, typical subtype	Repeat
B	IPR011989	Armadillo-like helical	Homologous Superfamily
B	IPR005225	Small GTP-binding domain	Domain
B	IPR000719	Protein kinase domain	Domain
B	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
B	IPR032171	C-terminal of Roc (COR) domain	Domain
B	IPR011009	Protein kinase-like domain superfamily	Homologous Superfamily
C	IPR016024	Armadillo-type fold	Homologous Superfamily
C	IPR020859	Roc domain	Domain
C	IPR017441	Protein kinase, ATP binding site	Binding Site
C	IPR036770	Ankyrin repeat-containing domain superfamily	Homologous Superfamily
C	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
C	IPR032675	Leucine-rich repeat domain superfamily	Homologous Superfamily
C	IPR008271	Serine/threonine-protein kinase, active site	Active Site
C	IPR051420	Ser/Thr Protein Kinases with Diverse Regulatory Roles	Family
C	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
C	IPR001611	Leucine-rich repeat	Repeat
C	IPR003591	Leucine-rich repeat, typical subtype	Repeat
C	IPR011989	Armadillo-like helical	Homologous Superfamily
C	IPR005225	Small GTP-binding domain	Domain
C	IPR000719	Protein kinase domain	Domain
C	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
C	IPR032171	C-terminal of Roc (COR) domain	Domain
C	IPR011009	Protein kinase-like domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: Q5S007	Parkinson disease autosomal dominant Parkinson disease 8 renal cell carcinoma sarcomatoid renal cell carcinoma endometriosis collecting duct carcinoma Crohn disease Nerve Degeneration chromophobe renal cell carcinoma papillary renal cell carcinoma inflammatory bowel disease large cell medulloblastoma tuberculosis lung carcinoma multiple system atrophy Parkinson disease autosomal dominant Parkinson disease 8 renal cell carcinoma sarcomatoid renal cell carcinoma endometriosis collecting duct carcinoma Crohn disease Nerve Degeneration chromophobe renal cell carcinoma papillary renal cell carcinoma inflammatory bowel disease large cell medulloblastoma tuberculosis lung carcinoma multiple system atrophy Alzheimer disease neurodegenerative disease ovarian cancer autosomal recessive juvenile Parkinson disease 2 pancreatic intraductal papillary-mucinous carcinoma clear cell renal carcinoma Pick disease renal carcinoma intellectual disability schizophrenia late-onset Parkinson disease ulcerative colitis MALT lymphoma myopathy atypical teratoid rhabdoid tumor non-small cell lung carcinoma ovarian mucinous adenocarcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia parkinsonian disorder diabetes mellitus pilocytic astrocytoma invasive ductal breast carcinoma thrombocytopenia due to immune destruction lung adenocarcinoma medulloblastoma osteosarcoma ovarian serous adenocarcinoma common variable immunodeficiency dementia
B	Pharos: Q5S007	Parkinson disease autosomal dominant Parkinson disease 8 renal cell carcinoma sarcomatoid renal cell carcinoma endometriosis collecting duct carcinoma Crohn disease Nerve Degeneration chromophobe renal cell carcinoma papillary renal cell carcinoma inflammatory bowel disease large cell medulloblastoma tuberculosis lung carcinoma multiple system atrophy Parkinson disease autosomal dominant Parkinson disease 8 renal cell carcinoma sarcomatoid renal cell carcinoma endometriosis collecting duct carcinoma Crohn disease Nerve Degeneration chromophobe renal cell carcinoma papillary renal cell carcinoma inflammatory bowel disease large cell medulloblastoma tuberculosis lung carcinoma multiple system atrophy Alzheimer disease neurodegenerative disease ovarian cancer autosomal recessive juvenile Parkinson disease 2 pancreatic intraductal papillary-mucinous carcinoma clear cell renal carcinoma Pick disease renal carcinoma intellectual disability schizophrenia late-onset Parkinson disease ulcerative colitis MALT lymphoma myopathy atypical teratoid rhabdoid tumor non-small cell lung carcinoma ovarian mucinous adenocarcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia parkinsonian disorder diabetes mellitus pilocytic astrocytoma invasive ductal breast carcinoma thrombocytopenia due to immune destruction lung adenocarcinoma medulloblastoma osteosarcoma ovarian serous adenocarcinoma common variable immunodeficiency dementia
C	Pharos: Q5S007	Parkinson disease autosomal dominant Parkinson disease 8 renal cell carcinoma sarcomatoid renal cell carcinoma endometriosis collecting duct carcinoma Crohn disease Nerve Degeneration chromophobe renal cell carcinoma papillary renal cell carcinoma inflammatory bowel disease large cell medulloblastoma tuberculosis lung carcinoma multiple system atrophy Parkinson disease autosomal dominant Parkinson disease 8 renal cell carcinoma sarcomatoid renal cell carcinoma endometriosis collecting duct carcinoma Crohn disease Nerve Degeneration chromophobe renal cell carcinoma papillary renal cell carcinoma inflammatory bowel disease large cell medulloblastoma tuberculosis lung carcinoma multiple system atrophy Alzheimer disease neurodegenerative disease ovarian cancer autosomal recessive juvenile Parkinson disease 2 pancreatic intraductal papillary-mucinous carcinoma clear cell renal carcinoma Pick disease renal carcinoma intellectual disability schizophrenia late-onset Parkinson disease ulcerative colitis MALT lymphoma myopathy atypical teratoid rhabdoid tumor non-small cell lung carcinoma ovarian mucinous adenocarcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia parkinsonian disorder diabetes mellitus pilocytic astrocytoma invasive ductal breast carcinoma thrombocytopenia due to immune destruction lung adenocarcinoma medulloblastoma osteosarcoma ovarian serous adenocarcinoma common variable immunodeficiency dementia