6XQZ
Crystal structure of the catalytic domain of PBP2 S310A from Neisseria gonorrhoeae at pH 7.5
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | d6xqzb_ | Multi-domain proteins (alpha and beta) | beta-lactamase/transpeptidase-like | beta-lactamase/transpeptidase-like | automated matches | automated matches | (Neisseria gonorrhoeae ) [TaxId: 485 ], (Neisseria gonorrhoeae ) [TaxId: 485 ], | SCOPe (2.08) |
A | d6xqza1 | Multi-domain proteins (alpha and beta) | beta-lactamase/transpeptidase-like | beta-lactamase/transpeptidase-like | automated matches | automated matches | (Neisseria gonorrhoeae ) [TaxId: 485 ], (Neisseria gonorrhoeae ) [TaxId: 485 ], | SCOPe (2.08) |
A | d6xqza2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | (Neisseria gonorrhoeae ) [TaxId: 485 ], (Neisseria gonorrhoeae ) [TaxId: 485 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | Transpeptidase_1st_1 | e6xqzB1 | A: alpha complex topology | X: alpha-helical domain in beta-lactamase/transpeptidase-like proteins (From Topology) | H: alpha-helical domain in beta-lactamase/transpeptidase-like proteins (From Topology) | T: alpha-helical domain in beta-lactamase/transpeptidase-like proteins | F: Transpeptidase_1st_1 | ECOD (1.6) |
B | Transpeptidase_2nd | e6xqzB2 | A: a+b three layers | X: Profilin-like | H: a+b domain in beta-lactamase/transpeptidase-like proteins (From Topology) | T: a+b domain in beta-lactamase/transpeptidase-like proteins | F: Transpeptidase_2nd | ECOD (1.6) |
A | Transpeptidase_1st_1 | e6xqzA2 | A: alpha complex topology | X: alpha-helical domain in beta-lactamase/transpeptidase-like proteins (From Topology) | H: alpha-helical domain in beta-lactamase/transpeptidase-like proteins (From Topology) | T: alpha-helical domain in beta-lactamase/transpeptidase-like proteins | F: Transpeptidase_1st_1 | ECOD (1.6) |
A | Transpeptidase_2nd | e6xqzA1 | A: a+b three layers | X: Profilin-like | H: a+b domain in beta-lactamase/transpeptidase-like proteins (From Topology) | T: a+b domain in beta-lactamase/transpeptidase-like proteins | F: Transpeptidase_2nd | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00905 | Penicillin binding protein transpeptidase domain (Transpeptidase) | Penicillin binding protein transpeptidase domain | The active site serine (residue 337 in Swiss:P14677) is conserved in all members of this family. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR012338 | Beta-lactamase/transpeptidase-like | Homologous Superfamily | |
IPR050515 | Bacterial Transpeptidases and Beta-Lactamases | Family | |
IPR036138 | Penicillin-binding protein, dimerisation domain superfamily | Homologous Superfamily | |
IPR037532 | Peptidoglycan D,D-transpeptidase FtsI | Family | |
IPR005311 | Penicillin-binding protein, dimerisation domain | Domain | |
IPR001460 | Penicillin-binding protein, transpeptidase | Domain |