6ZOL
SARS-CoV-2-Nsp1-40S complex, focused on head
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
P [auth g] | d6zolg_ | All beta proteins | 7-bladed beta-propeller | WD40 repeat-like | WD40-repeat | Guanine nucleotide-binding protein subunit beta-2-like 1 (GNB2L1 or RACK1) | (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
J [auth T] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8089318 | 3000034 | SCOP2B (2022-06-29) |
K [auth U] | SCOP2B Superfamily | Ribosomal protein S10 | 8098806 | 3001336 | SCOP2B (2022-06-29) |
L [auth Z] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8090992 | 3000034 | SCOP2B (2022-06-29) |
M [auth c] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8063426 | 3000135 | SCOP2B (2022-06-29) |
N [auth d] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8052572 | 3000068 | SCOP2B (2022-06-29) |
B [auth D] | SCOP2B Superfamily | Prokaryotic type KH domain (KH-domain type II) | 8043545 | 3001043 | SCOP2B (2022-06-29) |
C [auth F] | SCOP2B Superfamily | Ribosomal protein S7 | 8066003 | 3000799 | SCOP2B (2022-06-29) |
D [auth K] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8055714 | 3000034 | SCOP2B (2022-06-29) |
E [auth M] | SCOP2B Superfamily | L30e-like | 8063978 | 3001739 | SCOP2B (2022-06-29) |
G [auth Q] | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8082685 | 3000100 | SCOP2B (2022-06-29) |
I [auth S] | SCOP2B Superfamily | S13-like H2TH domain | 8101555 | 3000053 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
J [auth T] | Ribosomal_S19e | e6zolT1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: Ribosomal_S19e | ECOD (1.6) |
K [auth U] | Ribosomal_S10_1 | e6zolU1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S10 (From Topology) | T: Ribosomal protein S10 | F: Ribosomal_S10_1 | ECOD (1.6) |
L [auth Z] | Ribosomal_S25 | e6zolZ1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: Ribosomal_S25 | ECOD (1.6) |
M [auth c] | Ribosomal_S28e | e6zolc1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosomal_S28e | ECOD (1.6) |
N [auth d] | Ribosomal_S14_2 | e6zold1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: Ribosomal_S14_2 | ECOD (1.6) |
O [auth f] | Ribosomal_S27 | e6zolf1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_S27 | ECOD (1.6) |
P [auth g] | DUF1899 | e6zolg1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: DUF1899 | ECOD (1.6) |
B [auth D] | Ribosomal_S3_C | e6zolD2 | A: a+b two layers | X: T-fold | H: Ribosomal protein S3-C (From Topology) | T: Ribosomal protein S3-C | F: Ribosomal_S3_C | ECOD (1.6) |
B [auth D] | KH_2_3 | e6zolD1 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Prokaryotic type KH domain (KH-domain type II) | F: KH_2_3 | ECOD (1.6) |
C [auth F] | Ribosomal_S7_1 | e6zolF1 | A: alpha arrays | X: Ribosomal protein S7 (From Topology) | H: Ribosomal protein S7 (From Topology) | T: Ribosomal protein S7 | F: Ribosomal_S7_1 | ECOD (1.6) |
D [auth K] | S10_plectin | e6zolK1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: S10_plectin | ECOD (1.6) |
E [auth M] | Ribosomal_L7Ae | e6zolM1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: Ribosomal_L7Ae | ECOD (1.6) |
F [auth P] | Ribosomal_S19 | e6zolP1 | A: a+b two layers | X: Ribosomal protein S19 (From Topology) | H: Ribosomal protein S19 (From Topology) | T: Ribosomal protein S19 | F: Ribosomal_S19 | ECOD (1.6) |
G [auth Q] | Ribosomal_S9 | e6zolQ1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: Ribosomal_S9 | ECOD (1.6) |
H [auth R] | Ribosomal_S17e | e6zolR1 | A: alpha arrays | X: HTH | H: HTH | T: FF domain | F: Ribosomal_S17e | ECOD (1.6) |
I [auth S] | Ribosomal_S13 | e6zolS1 | A: alpha arrays | X: HhH/H2TH | H: H2TH (From Topology) | T: H2TH | F: Ribosomal_S13 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
J [auth T] | PF01090 | Ribosomal protein S19e (Ribosomal_S19e) | Ribosomal protein S19e | - | Family |
K [auth U] | PF00338 | Ribosomal protein S10p/S20e (Ribosomal_S10) | Ribosomal protein S10p/S20e | This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. | Domain |
B [auth D] | PF07650 | KH domain (KH_2) | KH domain | - | Domain |
B [auth D] | PF00253 | Ribosomal protein S14p/S29e (Ribosomal_S14) | Ribosomal protein S14p/S29e | - | Family |
B [auth D] | PF00189 | Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C) | Ribosomal protein S3, C-terminal domain | This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. | Domain |
C [auth F] | PF00177 | Ribosomal protein S7p/S5e (Ribosomal_S7) | Ribosomal protein S7p/S5e | This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. | Domain |
C [auth F] | PF01599 | Ribosomal protein S27a (Ribosomal_S27) | Ribosomal protein S27a | This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins ... | Domain |
D [auth K] | PF03501 | Plectin/S10 domain (S10_plectin) | Plectin/S10 domain | This presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding. | Domain |
E [auth M] | PF01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... | Domain |
F [auth P] | PF00203 | Ribosomal protein S19 (Ribosomal_S19) | Ribosomal protein S19 | - | Domain |
G [auth Q] | PF00380 | Ribosomal protein S9/S16 (Ribosomal_S9) | Ribosomal protein S9/S16 | - | Family |
I [auth S] | PF00416 | Ribosomal protein S13/S18 (Ribosomal_S13) | Ribosomal protein S13/S18 | - | Family |