6ZP4

SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth a]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like 8052791 3001397 SCOP2B (2022-06-29)
B [auth p]SCOP2B SuperfamilyRibosomal S3Ae-like 8053212 3002166 SCOP2B (2022-06-29)
D [auth Q]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain) 8053143 3000068 SCOP2B (2022-06-29)
E [auth q]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8052757 3000334 SCOP2B (2022-06-29)
E [auth q]SCOP2B SuperfamilyNucleic acid-binding proteins 8052756 3000135 SCOP2B (2022-06-29)
E [auth q]SCOP2B SuperfamilyAlpha-L RNA-binding motif 8052755 3001473 SCOP2B (2022-06-29)
G [auth r]SCOP2B SuperfamilyGS N-terminal domain-like 8053171 3000408 SCOP2B (2022-06-29)
I [auth t]SCOP2B Superfamily50S Ribosomal protein L14-like 8053077 3000433 SCOP2B (2022-06-29)
K [auth n]SCOP2B SuperfamilyNucleic acid-binding proteins 8052717 3000135 SCOP2B (2022-06-29)
K [auth n]SCOP2B SuperfamilyRibosomal S17 N-terminal domain-like 8052715 3002138 SCOP2B (2022-06-29)
L [auth m]SCOP2B SuperfamilyS15/NS1 RNA-binding domain 8052959 3001284 SCOP2B (2022-06-29)
L [auth m]SCOP2B SuperfamilyHomeodomain-like 8052958 3000001 SCOP2B (2022-06-29)
M [auth y]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain) 8053139 3000068 SCOP2B (2022-06-29)
N [auth D]SCOP2B SuperfamilyRibosomal protein S8 8095469 3000709 SCOP2B (2022-06-29)
Q [auth T]SCOP2B SuperfamilyRibosomal protein S30e-like 8053453 3002190 SCOP2B (2022-06-29)
T [auth b]SCOP2B SuperfamilyProkaryotic type KH domain (KH-domain type II) 8043545 3001043 SCOP2B (2022-06-29)
U [auth e]SCOP2B SuperfamilyRibosomal protein S7 8066003 3000799 SCOP2B (2022-06-29)
V [auth u]SCOP2B SuperfamilyWinged helix DNA-binding domain 8055714 3000034 SCOP2B (2022-06-29)
W [auth v]SCOP2B SuperfamilyL30e-like 8063978 3001739 SCOP2B (2022-06-29)
Y [auth g]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like 8082685 3000100 SCOP2B (2022-06-29)
Z [auth k]SCOP2B SuperfamilyS13-like H2TH domain 8101555 3000053 SCOP2B (2022-06-29)
AA [auth x]SCOP2B SuperfamilyWinged helix DNA-binding domain 8089318 3000034 SCOP2B (2022-06-29)
BA [auth h]SCOP2B SuperfamilyRibosomal protein S10 8098806 3001336 SCOP2B (2022-06-29)
CA [auth P]SCOP2B SuperfamilyWinged helix DNA-binding domain 8090992 3000034 SCOP2B (2022-06-29)
DA [auth S]SCOP2B SuperfamilyNucleic acid-binding proteins 8063426 3000135 SCOP2B (2022-06-29)
EA [auth l]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain) 8052572 3000068 SCOP2B (2022-06-29)
HA [auth i]SCOP2B SuperfamilyTranslational machinery components 8098844 3000571 SCOP2B (2022-06-29)
LA [auth B]SCOP2B SuperfamilyRNA-binding domain, RBD 8073934 3000110 SCOP2B (2022-06-29)
NA [auth C]SCOP2B SuperfamilyTPR-like 8093044 3001345 SCOP2B (2022-06-29)
NA [auth C]SCOP2B SuperfamilyWinged helix DNA-binding domain 8093051 3000034 SCOP2B (2022-06-29)
OA [auth E]SCOP2B SuperfamilyWinged helix DNA-binding domain 8091486 3000034 SCOP2B (2022-06-29)
OA [auth E]SCOP2B SuperfamilyTPR-like 8091483 3001345 SCOP2B (2022-06-29)
PA [auth F]SCOP2B SuperfamilyEIF3 subunit F C-terminal domain-like 8053241 3002167 SCOP2B (2022-06-29)
PA [auth F]SCOP2B SuperfamilyJAB1/MPN domain-like 8053242 3001105 SCOP2B (2022-06-29)
QA [auth H]SCOP2B SuperfamilyJAB1/MPN domain-like 8053284 3001105 SCOP2B (2022-06-29)
RA [auth K]SCOP2B SuperfamilyWinged helix DNA-binding domain 8002864 3000034 SCOP2B (2022-06-29)
RA [auth K]SCOP2B SuperfamilyARM repeat-like 8002866 3000116 SCOP2B (2022-06-29)
YA [auth O]SCOP2B SuperfamilyNucleic acid-binding proteins 8042151 3000135 SCOP2B (2022-06-29)
YA [auth O]SCOP2B SuperfamilyeIF2alpha middle domain-like 8042150 3001761 SCOP2B (2022-06-29)
YA [auth O]SCOP2B SuperfamilyeIF-2-alpha, C-terminal domain 8038509 3001618 SCOP2B (2022-06-29)
AB [auth Z]SCOP2B SuperfamilyeIF1-like 8035729 3001441 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth a]Ribosomal_S2_2e6zp4a1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: Ribosomal_S2_2ECOD (1.6)
B [auth p]Ribosomal_S3Ae_Ne6zp4p1 A: beta barrelsX: Ribosomal protein L25-likeH: 40S ribosomal protein S3A N-terminal domain (From Topology)T: 40S ribosomal protein S3A N-terminal domainF: Ribosomal_S3Ae_NECOD (1.6)
B [auth p]Ribosomal_S3Ae_Ce6zp4p2 A: a+b two layersX: T-foldH: 40S ribosomal protein S3A C-terminal domain (From Topology)T: 40S ribosomal protein S3A C-terminal domainF: Ribosomal_S3Ae_CECOD (1.6)
C [auth d]Ribosomal_S5_C_1e6zp4d3 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S5_C_1ECOD (1.6)
C [auth d]Ribosomal_S5_3e6zp4d2 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: Ribosomal_S5_3ECOD (1.6)
C [auth d]Ribosomal_S5_2e6zp4d1 A: extended segmentsX: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)H: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)T: N-terminal region in 40S ribosomal protein rpS2 (S5p)F: Ribosomal_S5_2ECOD (1.6)
D [auth Q]Ribosomal_S26ee6zp4Q1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_S26eECOD (1.6)
E [auth q]Ribosomal_S4ee6zp4q2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S4eECOD (1.6)
E [auth q]40S_S4_Ce6zp4q3 A: beta barrelsX: SH3H: SH3T: SH3F: 40S_S4_CECOD (1.6)
E [auth q]RS4NTe6zp4q1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: RS4NTECOD (1.6)
F [auth W]Ribosomal_L41e6zp4W1 A: extended segmentsX: Ribosomal protein L41-A (From Topology)H: Ribosomal protein L41-A (From Topology)T: Ribosomal protein L41-AF: Ribosomal_L41ECOD (1.6)
G [auth r]Ribosomal_S6ee6zp4r1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: Ribosomal_S6eECOD (1.6)
H [auth s]Ribosomal_S7e_Ne6zp4s1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: 40S ribosomal protein S7-A (From Topology)T: 40S ribosomal protein S7-AF: Ribosomal_S7e_NECOD (1.6)
H [auth s]Ribosomal_S7e_C_1e6zp4s2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: 40S ribosomal protein S7-A (From Topology)T: 40S ribosomal protein S7-AF: Ribosomal_S7e_C_1ECOD (1.6)
I [auth t]Ribosomal_S8ee6zp4t1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_S8eECOD (1.6)
J [auth c]S4e6zp4c1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: S4ECOD (1.6)
K [auth n]Ribosomal_S17_1e6zp4n1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S17_1ECOD (1.6)
L [auth m]Ribosomal_S13_Ne6zp4m1 A: alpha arraysX: HTHH: 40S ribosomal protein S13 N-terminal domain (From Topology)T: 40S ribosomal protein S13 N-terminal domainF: Ribosomal_S13_NECOD (1.6)
L [auth m]Ribosomal_S15_2e6zp4m2 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: Ribosomal_S15_2ECOD (1.6)
M [auth y]Ribosomal_S21ee6zp4y1 A: a+b two layersX: 40S ribosomal protein rpS21 (S21e) (From Topology)H: 40S ribosomal protein rpS21 (S21e) (From Topology)T: 40S ribosomal protein rpS21 (S21e)F: Ribosomal_S21eECOD (1.6)
N [auth D]Ribosomal_S8_N_1e6zp4D1 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: Ribosomal_S8_N_1ECOD (1.6)
N [auth D]Ribosomal_S8_C_1e6zp4D2 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: Ribosomal_S8_C_1ECOD (1.6)
O [auth z]Ribosomal_S24ee6zp4z1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_S24eECOD (1.6)
P [auth R]Ribosomal_S27ee6zp4R1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_S27eECOD (1.6)
Q [auth T]Ribosomal_S30e6zp4T1 A: extended segmentsX: 40S ribosomal protein S30 (S30e) (From Topology)H: 40S ribosomal protein S30 (S30e) (From Topology)T: 40S ribosomal protein S30 (S30e)F: Ribosomal_S30ECOD (1.6)
S [auth w]Ribosomal_S17ee6zp4w1 A: alpha arraysX: HTHH: HTHT: FF domainF: Ribosomal_S17eECOD (1.6)
T [auth b]Ribosomal_S3_Ce6zp4b2 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: Ribosomal_S3_CECOD (1.6)
T [auth b]KH_2_3e6zp4b1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: KH_2_3ECOD (1.6)
U [auth e]Ribosomal_S7_1e6zp4e1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: Ribosomal_S7_1ECOD (1.6)
V [auth u]S10_plectine6zp4u1 A: alpha arraysX: HTHH: HTHT: wingedF: S10_plectinECOD (1.6)
W [auth v]Ribosomal_L7Aee6zp4v1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: Ribosomal_L7AeECOD (1.6)
X [auth o]Ribosomal_S19e6zp4o1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: Ribosomal_S19ECOD (1.6)
Y [auth g]Ribosomal_S9e6zp4g1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S9ECOD (1.6)
Z [auth k]Ribosomal_S13e6zp4k1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: Ribosomal_S13ECOD (1.6)
AA [auth x]Ribosomal_S19ee6zp4x1 A: alpha arraysX: HTHH: HTHT: wingedF: Ribosomal_S19eECOD (1.6)
BA [auth h]Ribosomal_S10_1e6zp4h1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: Ribosomal_S10_1ECOD (1.6)
CA [auth P]Ribosomal_S25e6zp4P1 A: alpha arraysX: HTHH: HTHT: wingedF: Ribosomal_S25ECOD (1.6)
DA [auth S]Ribosomal_S28ee6zp4S1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S28eECOD (1.6)
EA [auth l]Ribosomal_S14_2e6zp4l1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_S14_2ECOD (1.6)
FA [auth U]Ribosomal_S27e6zp4U1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_S27ECOD (1.6)
GA [auth V]DUF1899e6zp4V1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: DUF1899ECOD (1.6)
HA [auth i]Ribosomal_S11e6zp4i1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_S11ECOD (1.6)
IA [auth j]Ribosom_S12_S23e6zp4j1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosom_S12_S23ECOD (1.6)
JA [auth G]eIF-1ae6zp4G1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: eIF-1aECOD (1.6)
KA [auth I]ANAPC4_WD40_4e6zp4I1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_4ECOD (1.6)
OA [auth E]PCIe6zp4E1 A: alpha arraysX: HTHH: HTHT: wingedF: PCIECOD (1.6)
OA [auth E]eIF3_Ne6zp4E2 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: eIF3_NECOD (1.6)
OA [auth E]KOG2758e6zp4E3 A: extended segmentsX: 26S proteasome regulatory subunits C-terminal helicesH: 26S proteasome regulatory subunit RPN7 C-terminal helix (From Topology)T: 26S proteasome regulatory subunit RPN7 C-terminal helixF: KOG2758ECOD (1.6)
PA [auth F]JAB_1e6zp4F1 A: a+b three layersX: Cytidine deaminase-like (From Topology)H: Cytidine deaminase-like (From Topology)T: Cytidine deaminase-likeF: JAB_1ECOD (1.6)
PA [auth F]MitMem_rege6zp4F2 A: extended segmentsX: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain (From Topology)H: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain (From Topology)T: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domainF: MitMem_regECOD (1.6)
QA [auth H]JAB_1e6zp4H2 A: a+b three layersX: Cytidine deaminase-like (From Topology)H: Cytidine deaminase-like (From Topology)T: Cytidine deaminase-likeF: JAB_1ECOD (1.6)
QA [auth H]KOG1560e6zp4H1 A: extended segmentsX: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain (From Topology)H: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain (From Topology)T: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domainF: KOG1560ECOD (1.6)
RA [auth K]CSN8_PSD8_EIF3K_Ce6zp4K1 A: alpha arraysX: HTHH: HTHT: wingedF: CSN8_PSD8_EIF3K_CECOD (1.6)
RA [auth K]SAC3_GANP_1ste6zp4K2 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: SAC3_GANP_1stECOD (1.6)
XA [auth 4]eIF-5_eIF-2B_Ne6zp442 A: alpha arraysX: HTHH: HTHT: wingedF: eIF-5_eIF-2B_NECOD (1.6)
XA [auth 4]eIF-5_eIF-2B_Ce6zp441 A: few secondary structure elementsX: Rubredoxin-likeH: Zinc-binding domain of translation initiation factor 2 beta (From Topology)T: Zinc-binding domain of translation initiation factor 2 betaF: eIF-5_eIF-2B_CECOD (1.6)
YA [auth O]S1_1e6zp4O1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: S1_1ECOD (1.6)
YA [auth O]EIF_2_alpha_Ne6zp4O3 A: alpha arraysX: HhH/H2THH: eIF2alpha middle domain (From Topology)T: eIF2alpha middle domainF: EIF_2_alpha_NECOD (1.6)
YA [auth O]EIF_2_alpha_Ce6zp4O2 A: a+b two layersX: Alpha-beta plaitsH: eIF-2-alpha, C-terminal domain (From Topology)T: eIF-2-alpha, C-terminal domainF: EIF_2_alpha_CECOD (1.6)
ZA [auth Y]GTP_EFTU_D2_2e6zp4Y3 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: GTP_EFTU_D2_2ECOD (1.6)
ZA [auth Y]eIF2_Ce6zp4Y1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Aminomethyltransferase beta-barrel domainF: eIF2_CECOD (1.6)
ZA [auth Y]MnmE_helical_2nde6zp4Y2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: MnmE_helical_2ndECOD (1.6)
AB [auth Z]SUI1e6zp4Z1 A: a+b two layersX: Glucose permease domain IIB-likeH: eIF1-like (From Topology)T: eIF1-likeF: SUI1ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
D [auth Q]PF00900Ribosomal family S4e (Ribosomal_S4e)Ribosomal family S4e- Family
D [auth Q]PF08071RS4NT (NUC023) domain (RS4NT)RS4NT (NUC023) domainThis is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1].Domain
F [auth W]PF05162Ribosomal protein L41 (Ribosomal_L41)Ribosomal protein L41- Family
N [auth D]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
N [auth D]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domain- Domain
P [auth R]PF01667Ribosomal protein S27 (Ribosomal_S27e)Ribosomal protein S27- Family
Q [auth T]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
FA [auth U]PF01599Ribosomal protein S27a (Ribosomal_S27)Ribosomal protein S27aThis family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins ...This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins as extensions of ubiquitin promotes their incorporation into nascent ribosomes by a transient metabolic stabilisation and is required for efficient ribosome biogenesis [3]. The ribosomal extension protein S27a contains a basic region that is proposed to form a zinc finger; its fusion gene is proposed as a mechanism to maintain a fixed ratio between ubiquitin necessary for degrading proteins and ribosomes a source of proteins [2].
Domain
FA [auth U]PF03501Plectin/S10 domain (S10_plectin)Plectin/S10 domainThis presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding.Domain
GA [auth V]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
GA [auth V]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
JA [auth G]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
JA [auth G]PF01176Translation initiation factor 1A / IF-1 (eIF-1a)Translation initiation factor 1A / IF-1This family includes both the eukaryotic translation factor eIF-1A and the bacterial translation initiation factor IF-1.Domain
KA [auth I]PF12894Anaphase-promoting complex subunit 4 WD40 domain (ANAPC4_WD40)Anaphase-promoting complex subunit 4 WD40 domain- Repeat
KA [auth I]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
KA [auth I]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
LA [auth B]PF08662Eukaryotic translation initiation factor eIF2A (eIF2A)Eukaryotic translation initiation factor eIF2A- Repeat
LA [auth B]PF07650KH domain (KH_2)KH domain- Domain
LA [auth B]PF00076RNA recognition motif (RRM_1)RNA recognition motifThe RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and pro ...The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins (Swiss:P05455) have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins (Swiss:P05455) are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease.
Domain
LA [auth B]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.Domain
MA [auth A]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
MA [auth A]PF1612240S ribosomal protein SA C-terminus (40S_SA_C)40S ribosomal protein SA C-terminus- Family
MA [auth A]PF22591eIF3a, PCI domain, TPR-like region (eIF3a_PCI_TPR-like)eIF3a, PCI domain, TPR-like regionThis entry represents the TPR-like region of the PCI domain of the Eukaryotic translation initiation factor 3 subunit A from Saccharomyces cerevisiae (eIF3a), the RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex ...This entry represents the TPR-like region of the PCI domain of the Eukaryotic translation initiation factor 3 subunit A from Saccharomyces cerevisiae (eIF3a), the RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. This region folds into flatly arranged helical repeats [1].
Domain
MA [auth A]PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1].Domain
NA [auth C]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
NA [auth C]PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1].Domain
NA [auth C]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
OA [auth E]PF09440eIF3 subunit 6 N terminal domain (eIF3_N)eIF3 subunit 6 N terminal domainThis is the N terminal domain of subunit 6 translation initiation factor eIF3.Domain
OA [auth E]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
OA [auth E]PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1].Domain
OA [auth E]PF21357Eukaryotic translation initiation factor 3 subunit E, C-terminal (EIF3E_C)Eukaryotic translation initiation factor 3 subunit E, C-terminalEukaryotic translation initiation factor 3 subunit E (EIF3E) is a component of the EIF3 complex, involved in protein synthesis. This is the C-terminal helical tail of EIF3E [1].Domain
PA [auth F]PF13012Maintenance of mitochondrial structure and function (MitMem_reg)Maintenance of mitochondrial structure and function- Family
QA [auth H]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.Domain
QA [auth H]PF19445C-terminal region of eIF3h (eIF3h_C)C-terminal region of eIF3h- Family
RA [auth K]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
RA [auth K]PF10075CSN8/PSMD8/EIF3K family (CSN8_PSD8_EIF3K)CSN8/PSMD8/EIF3K family- Family
SA [auth L]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
TA [auth M]PF18005eIF3 subunit M, C-terminal helix (eIF3m_C_helix)eIF3 subunit M, C-terminal helixThis is the C-terminal helix domain found in Eukaryotic translation initiation factor 3 subunit M (eIF3m). In mammalian eIF3a, the C-terminal helix following the PCI domain is involved in interactions with other core subunits [1].Domain
TA [auth M]PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1].Domain
TA [auth M]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
UA [auth N]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
UA [auth N]PF16205Ribosomal_S17 N-terminal (Ribosomal_S17_N)Ribosomal_S17 N-terminal- Family
UA [auth N]PF05091Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) (eIF-3_zeta)Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)- Family
VA [auth X]PF01090Ribosomal protein S19e (Ribosomal_S19e)Ribosomal protein S19e- Family
YA [auth O]PF07541Eukaryotic translation initiation factor 2 alpha subunit (EIF_2_alpha)Eukaryotic translation initiation factor 2 alpha subunit- Family
YA [auth O]PF00575S1 RNA binding domain (S1)S1 RNA binding domainThe S1 domain occurs in a wide range of RNA associated proteins. It is structurally similar to cold shock protein which binds nucleic acids. The S1 domain has an OB-fold structure.Domain
YA [auth O]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19- Domain
ZA [auth Y]PF01249Ribosomal protein S21e (Ribosomal_S21e)Ribosomal protein S21e- Family
ZA [auth Y]PF00009Elongation factor Tu GTP binding domain (GTP_EFTU)Elongation factor Tu GTP binding domainThis domain contains a P-loop motif, also found in several other families such as Pfam:PF00071, Pfam:PF00025 and Pfam:PF00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains.Domain
ZA [auth Y]PF03144Elongation factor Tu domain 2 (GTP_EFTU_D2)Elongation factor Tu domain 2Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA [1]. This domain is also found in other proteins such as e ...Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA [1]. This domain is also found in other proteins such as elongation factor G and translation initiation factor IF-2. This domain is structurally related to Pfam:PF03143, and in fact has weak sequence matches to this domain.
Domain
ZA [auth Y]PF09173Initiation factor eIF2 gamma, C terminal (eIF2_C)Initiation factor eIF2 gamma, C terminalMembers of this family, which are found in the initiation factors eIF2 and EF-Tu, adopt a structure consisting of a beta barrel with Greek key topology. They are required for formation of the ternary complex with GTP and initiator tRNA [1].Domain
AB [auth Z]PF01282Ribosomal protein S24e (Ribosomal_S24e)Ribosomal protein S24e- Family
AB [auth Z]PF01253Translation initiation factor SUI1 (SUI1)Translation initiation factor SUI1- Domain
BB [auth J]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth a]40S ribosomal protein SA
B [auth p]40S ribosomal protein S3a
C [auth d]40S ribosomal protein S2
D [auth Q]40S ribosomal protein S26
E [auth q]40S ribosomal protein S4, X isoform
F [auth W]60S ribosomal protein L41
G [auth r]40S ribosomal protein S6
H [auth s]40S ribosomal protein S7
I [auth t]40S ribosomal protein S8
J [auth c]40S ribosomal protein S9
K [auth n]40S ribosomal protein S11
L [auth m]40S ribosomal protein S13
M [auth y]40S ribosomal protein S21
N [auth D]40S ribosomal protein S15a
O [auth z]40S ribosomal protein S24
P [auth R]40S ribosomal protein S27
Q [auth T]40S ribosomal protein S30
R [auth 2]18S ribosomal RNA---
S [auth w]40S ribosomal protein S17
T [auth b]40S ribosomal protein S3
U [auth e]40S ribosomal protein S5
V [auth u]40S ribosomal protein S10
W [auth v]40S ribosomal protein S12
X [auth o]40S ribosomal protein S15
Y [auth g]40S ribosomal protein S16
Z [auth k]40S ribosomal protein S18
AA [auth x]40S ribosomal protein S19
BA [auth h]40S ribosomal protein S20
CA [auth P]40S ribosomal protein S25
DA [auth S]40S ribosomal protein S28
EA [auth l]40S ribosomal protein S29
FA [auth U]Ubiquitin-40S ribosomal protein S27a
GA [auth V]Receptor of activated protein C kinase 1
HA [auth i]40S ribosomal protein S14
IA [auth j]40S ribosomal protein S23
JA [auth G]Eukaryotic translation initiation factor 1A, X-chromosomal
KA [auth I]Eukaryotic translation initiation factor 3 subunit I
LA [auth B]Eukaryotic translation initiation factor 3 subunit B
MA [auth A]Eukaryotic translation initiation factor 3 subunit A
NA [auth C]Eukaryotic translation initiation factor 3 subunit C
OA [auth E]Eukaryotic translation initiation factor 3 subunit E
PA [auth F]Eukaryotic translation initiation factor 3 subunit F
QA [auth H]Eukaryotic translation initiation factor 3 subunit H
RA [auth K]Eukaryotic translation initiation factor 3 subunit K
SA [auth L]Eukaryotic translation initiation factor 3 subunit L
TA [auth M]Eukaryotic translation initiation factor 3 subunit M
UA [auth N]Eukaryotic translation initiation factor 3 subunit D
VA [auth X]Unknown factor---
WA [auth 1]tRNA---
XA [auth 4]Eukaryotic translation initiation factor 2 subunit 2
YA [auth O]Eukaryotic translation initiation factor 2 subunit 1
ZA [auth Y]Eukaryotic translation initiation factor 2 subunit 3
AB [auth Z]Eukaryotic translation initiation factor 1
BB [auth J]Non-structural protein 1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth a]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
A [auth a]IPR001865Small ribosomal subunit protein uS2Family
A [auth a]IPR032281Small ribosomal subunit protein uS2, C-terminal domainDomain
A [auth a]IPR027504Small ribosomal subunit protein uS2, vertebratesFamily
A [auth a]IPR005707Small ribosomal subunit protein uS2, eukaryotic/archaealFamily
A [auth a]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
A [auth a]IPR027498Small ribosomal subunit protein uS2, eukaryoticFamily
B [auth p]IPR001593Small ribosomal subunit protein eS1Family
B [auth p]IPR018281Small ribosomal subunit protein eS1, conserved siteConserved Site
B [auth p]IPR027500Small ribosomal subunit protein eS1, eukaryotesFamily
C [auth d]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
C [auth d]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
C [auth d]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
C [auth d]IPR000851Small ribosomal subunit protein uS5Family
C [auth d]IPR005711Small ribosomal subunit protein uS5, eukaryotic/archaealFamily
C [auth d]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
C [auth d]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
D [auth Q]IPR047864Ribosomal protein eS26, conserved siteConserved Site
D [auth Q]IPR038551Ribosomal protein eS26 superfamilyHomologous Superfamily
D [auth Q]IPR000892Small ribosomal subunit protein eS26Family
E [auth q]IPR013843Small ribosomal subunit protein eS4, N-terminalDomain
E [auth q]IPR032277Small ribosomal subunit protein eS4, C-terminal domainDomain
E [auth q]IPR013845Small ribosomal subunit protein eS4, central regionDomain
E [auth q]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
E [auth q]IPR041982Small ribosomal subunit protein eS4, KOW domainDomain
E [auth q]IPR018199Small ribosomal subunit protein eS4, N-terminal, conserved siteConserved Site
E [auth q]IPR002942RNA-binding S4 domainDomain
E [auth q]IPR000876Small ribosomal subunit protein eS4Family
E [auth q]IPR038237Small ribosomal subunit protein eS4, central domain superfamilyHomologous Superfamily
E [auth q]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
E [auth q]IPR005824KOWDomain
F [auth W]IPR007836Large ribosomal subunit protein eS32Family
G [auth r]IPR018282Small ribosomal subunit protein eS6, conserved siteConserved Site
G [auth r]IPR001377Small ribosomal subunit protein eS6Family
G [auth r]IPR014401Small ribosomal subunit protein eS6-likeFamily
H [auth s]IPR000554Small ribosomal subunit protein eS7Family
H [auth s]IPR047861Small ribosomal subunit protein eS7, conserved siteConserved Site
I [auth t]IPR042563Small ribosomal subunit protein eS8 subdomain, eukaryotesHomologous Superfamily
I [auth t]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
I [auth t]IPR018283Small ribosomal subunit protein eS8, conserved siteConserved Site
I [auth t]IPR001047Small ribosomal subunit protein eS8Family
J [auth c]IPR002942RNA-binding S4 domainDomain
J [auth c]IPR022801Small ribosomal subunit protein uS4Family
J [auth c]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
J [auth c]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
J [auth c]IPR005710Small ribosomal subunit protein uS4, eukaryotic/archaealFamily
J [auth c]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
K [auth n]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
K [auth n]IPR032440Small ribosomal subunit protein uS17, N-terminalDomain
K [auth n]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
K [auth n]IPR000266Small ribosomal subunit protein uS17Family
K [auth n]IPR028333Small ribosomal subunit protein uS17, archaeal/eukaryoticFamily
L [auth m]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
L [auth m]IPR000589Small ribosomal subunit protein uS15Family
L [auth m]IPR023029Small ribosomal subunit protein uS15, archaea/eukaryotesFamily
L [auth m]IPR012606Small ribosomal subunit protein uS15, N-terminalDomain
M [auth y]IPR038579Small ribosomal subunit protein eS21 superfamilyHomologous Superfamily
M [auth y]IPR018279Small ribosomal subunit protein eS21, conserved siteConserved Site
M [auth y]IPR001931Small ribosomal subunit protein eS21Family
N [auth D]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
N [auth D]IPR000630Small ribosomal subunit protein uS8Family
N [auth D]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
O [auth z]IPR053709Eukaryotic Ribosomal Protein eS24Homologous Superfamily
O [auth z]IPR001976Small ribosomal subunit protein eS24Family
O [auth z]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
O [auth z]IPR018098Small ribosomal subunit protein eS24 conserved siteConserved Site
P [auth R]IPR023407Small ribosomal subunit protein eS27, zinc-binding domain superfamilyHomologous Superfamily
P [auth R]IPR000592Small ribosomal subunit protein eS27Family
P [auth R]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
Q [auth T]IPR019954Ubiquitin conserved siteConserved Site
Q [auth T]IPR000626Ubiquitin-like domainDomain
Q [auth T]IPR006846Small ribosomal subunit protein eS30Family
Q [auth T]IPR039415Ubiquitin-like protein FUBIDomain
Q [auth T]IPR019956Ubiquitin domainDomain
Q [auth T]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
S [auth w]IPR001210Small ribosomal subunit protein eS17Family
S [auth w]IPR036401Small ribosomal subunit protein eS17 superfamilyHomologous Superfamily
S [auth w]IPR018273Small ribosomal subunit protein eS17, conserved siteConserved Site
T [auth b]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
T [auth b]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
T [auth b]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
T [auth b]IPR004044K Homology domain, type 2Domain
T [auth b]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
T [auth b]IPR005703Small ribosomal subunit protein uS3, eukaryotic/archaealFamily
T [auth b]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
U [auth e]IPR023798Small ribosomal subunit protein uS7 domainDomain
U [auth e]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
U [auth e]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
U [auth e]IPR000235Small ribosomal subunit protein uS7Family
U [auth e]IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily
V [auth u]IPR037447Small ribosomal subunit protein eS10Family
V [auth u]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
V [auth u]IPR005326Plectin/eS10, N-terminalDomain
W [auth v]IPR000530Small ribosomal subunit protein eS12Family
W [auth v]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
W [auth v]IPR047860Small ribosomal subunit protein eS12, conserved siteConserved Site
W [auth v]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
X [auth o]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
X [auth o]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
X [auth o]IPR005713Small ribosomal subunit protein uS19, eukaryotic/archaealFamily
X [auth o]IPR002222Small ribosomal subunit protein uS19Family
Y [auth g]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
Y [auth g]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
Y [auth g]IPR000754Small ribosomal subunit protein uS9Family
Y [auth g]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
Z [auth k]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
Z [auth k]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
Z [auth k]IPR001892Small ribosomal subunit protein uS13Family
Z [auth k]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
AA [auth x]IPR018277Small ribosomal subunit protein eS19, conserved siteConserved Site
AA [auth x]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
AA [auth x]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
AA [auth x]IPR001266Small ribosomal subunit protein eS19Family
BA [auth h]IPR027486Small ribosomal subunit protein uS10 domainDomain
BA [auth h]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
BA [auth h]IPR005729Small ribosomal subunit protein uS10, eukaryotic/archaealFamily
BA [auth h]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
BA [auth h]IPR001848Small ribosomal subunit protein uS10Family
CA [auth P]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
CA [auth P]IPR004977Small ribosomal subunit protein eS25Family
DA [auth S]IPR028626Ribosomal protein eS28 conserved siteConserved Site
DA [auth S]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
DA [auth S]IPR000289Small ribosomal subunit protein eS28Family
EA [auth l]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
EA [auth l]IPR043140Small ribosomal subunit protein uS14 superfamilyHomologous Superfamily
EA [auth l]IPR001209Small ribosomal subunit protein uS14Family
EA [auth l]IPR039744Small ribosomal subunit protein uS14, eukaryotes/archaeaFamily
FA [auth U]IPR019954Ubiquitin conserved siteConserved Site
FA [auth U]IPR050158Ubiquitin and ubiquitin-likeFamily
FA [auth U]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
FA [auth U]IPR000626Ubiquitin-like domainDomain
FA [auth U]IPR038582Small ribosomal subunit protein eS31 eukaryotic-type superfamilyHomologous Superfamily
FA [auth U]IPR002906Small ribosomal subunit protein eS31Domain
FA [auth U]IPR019956Ubiquitin domainDomain
FA [auth U]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
GA [auth V]IPR019775WD40 repeat, conserved siteConserved Site
GA [auth V]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
GA [auth V]IPR045223Small ribosomal subunit protein RACK1-likeFamily
GA [auth V]IPR020472G-protein beta WD-40 repeatRepeat
GA [auth V]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
GA [auth V]IPR001680WD40 repeatRepeat
HA [auth i]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
HA [auth i]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
HA [auth i]IPR001971Small ribosomal subunit protein uS11Family
IA [auth j]IPR006032Small ribosomal subunit protein uS12Family
IA [auth j]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
IA [auth j]IPR005680Small ribosomal subunit protein uS12, eukaryotic/archaealFamily
JA [auth G]IPR018104Translation initiation factor 1A (eIF-1A), conserved siteConserved Site
JA [auth G]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
JA [auth G]IPR006196RNA-binding domain, S1, IF1 typeDomain
JA [auth G]IPR001253Translation initiation factor 1A (eIF-1A)Family
KA [auth I]IPR027525Eukaryotic translation initiation factor 3 subunit IFamily
KA [auth I]IPR024977Anaphase-promoting complex subunit 4-like, WD40 domainDomain
KA [auth I]IPR019775WD40 repeat, conserved siteConserved Site
KA [auth I]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
KA [auth I]IPR001680WD40 repeatRepeat
KA [auth I]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
LA [auth B]IPR013979Translation initiation factor, beta propellor-like domainDomain
LA [auth B]IPR034363eIF3B, RNA recognition motifDomain
LA [auth B]IPR000504RNA recognition motif domainDomain
LA [auth B]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
LA [auth B]IPR011400Eukaryotic translation initiation factor 3 subunit BFamily
LA [auth B]IPR035979RNA-binding domain superfamilyHomologous Superfamily
LA [auth B]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
MA [auth A]IPR027512Eukaryotic translation initiation factor 3 subunit AFamily
MA [auth A]IPR000717Proteasome component (PCI) domainDomain
NA [auth C]IPR008905Eukaryotic translation initiation factor 3 subunit C, N-terminal domainDomain
NA [auth C]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
NA [auth C]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
NA [auth C]IPR027516Eukaryotic translation initiation factor 3 subunit CFamily
NA [auth C]IPR000717Proteasome component (PCI) domainDomain
OA [auth E]IPR016650Eukaryotic translation initiation factor 3 subunit EFamily
OA [auth E]IPR019010Eukaryotic translation initiation factor 3 subunit E, N-terminalDomain
OA [auth E]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
OA [auth E]IPR000717Proteasome component (PCI) domainDomain
PA [auth F]IPR027531Eukaryotic translation initiation factor 3 subunit FFamily
PA [auth F]IPR024969EIF3F/CSN6-like, C-terminalDomain
PA [auth F]IPR037518MPN domainDomain
PA [auth F]IPR000555JAB1/MPN/MOV34 metalloenzyme domainDomain
QA [auth H]IPR027524Eukaryotic translation initiation factor 3 subunit HFamily
QA [auth H]IPR045810eIF3h, C-terminalDomain
QA [auth H]IPR050242JAMM/MPN+ metalloenzymes, peptidase M67AFamily
QA [auth H]IPR037518MPN domainDomain
QA [auth H]IPR000555JAB1/MPN/MOV34 metalloenzyme domainDomain
RA [auth K]IPR016024Armadillo-type foldHomologous Superfamily
RA [auth K]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
RA [auth K]IPR033464CSN8/PSMD8/EIF3KDomain
RA [auth K]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
RA [auth K]IPR016020Translation initiation factor 3, subunit 12, N-terminal, eukaryoticHomologous Superfamily
RA [auth K]IPR000717Proteasome component (PCI) domainDomain
RA [auth K]IPR009374Eukaryotic translation initiation factor 3 subunit KFamily
SA [auth L]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
SA [auth L]IPR000717Proteasome component (PCI) domainDomain
SA [auth L]IPR019382Translation initiation factor 3 complex subunit LFamily
TA [auth M]IPR016024Armadillo-type foldHomologous Superfamily
TA [auth M]IPR040750eIF3 subunit M, C-terminal helix domainDomain
TA [auth M]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
TA [auth M]IPR027528Eukaryotic translation initiation factor 3 subunit MFamily
TA [auth M]IPR045237Eukaryotic translation initiation factor 3 subunit M eIF3m/COP9 signalosome complex subunit 7 COPS7Family
TA [auth M]IPR000717Proteasome component (PCI) domainDomain
UA [auth N]IPR007783Eukaryotic translation initiation factor 3 subunit DFamily
XA [auth 4]IPR016190Translation initiation factor IF2/IF5, zinc-bindingHomologous Superfamily
XA [auth 4]IPR016189Translation initiation factor IF2/IF5, N-terminalHomologous Superfamily
XA [auth 4]IPR002735Translation initiation factor IF2/IF5 domainDomain
XA [auth 4]IPR045196Translation initiation factor IF2/IF5Family
YA [auth O]IPR044126IF2a, S1-like domainDomain
YA [auth O]IPR024054Translation initiation factor 2, alpha subunit, middle domain superfamilyHomologous Superfamily
YA [auth O]IPR024055Translation initiation factor 2, alpha subunit, C-terminalHomologous Superfamily
YA [auth O]IPR003029S1 domainDomain
YA [auth O]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
YA [auth O]IPR011488Translation initiation factor 2, alpha subunitFamily
ZA [auth Y]IPR000795Translational (tr)-type GTP-binding domainDomain
ZA [auth Y]IPR009001Translation elongation factor EF1A/initiation factor IF2gamma, C-terminalHomologous Superfamily
ZA [auth Y]IPR004161Translation elongation factor EFTu-like, domain 2Domain
ZA [auth Y]IPR050543Eukaryotic Initiation Factor 2 Gamma SubunitFamily
ZA [auth Y]IPR044128Initiation factor eIF2 gamma, GTP-binding domainDomain
ZA [auth Y]IPR015256Initiation factor eIF2 gamma, C-terminalDomain
ZA [auth Y]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
ZA [auth Y]IPR044127Initiation factor eIF2 gamma, domain 2Domain
ZA [auth Y]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
AB [auth Z]IPR005874Eukaryotic translation initiation factor SUI1Family
AB [auth Z]IPR001950SUI1 domainDomain
AB [auth Z]IPR036877SUI1 domain superfamilyHomologous Superfamily
BB [auth J]IPR022733DPUP/SUD, C-terminal, betacoronavirusDomain
BB [auth J]IPR042515Non-structural protein NSP15, N-terminal domain superfamily, coronavirusHomologous Superfamily
BB [auth J]IPR043174Non-structural protein NSP15, middle domain superfamilyHomologous Superfamily
BB [auth J]IPR044315Nonstructural protein 14, betacoronavirusDomain
BB [auth J]IPR038123Non-structural protein NSP4, C-terminal superfamily, coronavirusHomologous Superfamily
BB [auth J]IPR042570Non-structural protein NSP3, nucleic acid-binding domain superfamily, betacoronavirusHomologous Superfamily
BB [auth J]IPR043178Papain-like protease, thumb domain superfamily, coronavirusHomologous Superfamily
BB [auth J]IPR046441RNA-dependent RNA polymerase, coronavirusDomain
BB [auth J]IPR044863Nidovirus RdRp-associated nucleotidyl transferase (NiRAN) domainDomain
BB [auth J]IPR044343Nonstructural protein 13, 1B domain, coronavirusDomain
BB [auth J]IPR038166Polyprotein cleavage domain PL2pro superfamily, betacoronavirusHomologous Superfamily
BB [auth J]IPR037227Endoribonuclease EndoU-likeHomologous Superfamily
BB [auth J]IPR027352Nonstructural protein 13, zinc-binding domain, coronavirus-likeDomain
BB [auth J]IPR009003Peptidase S1, PA clanHomologous Superfamily
BB [auth J]IPR013016Peptidase C16, coronavirusDomain
BB [auth J]IPR009466Non-structural protein 14, coronavirusDomain
BB [auth J]IPR044357NSP3, first ubiquitin-like (Ubl) domain, coronavirusDomain
BB [auth J]IPR046436Nidovirus 3'-5' exoribonuclease domainDomain
BB [auth J]IPR047570NSP12, interface domain, coronavirusDomain
BB [auth J]IPR018995RNA synthesis protein NSP10, coronavirusDomain
BB [auth J]IPR043615Nonstructural protein 2, N-terminal domain, coronavirusDomain
BB [auth J]IPR050534Coronaviruses polyprotein 1abFamily
BB [auth J]IPR043177Papain-like protease, N-terminal domain superfamily, coronavirusHomologous Superfamily
BB [auth J]IPR043606Coronavirus replicase NSP15, N-terminal oligomerizationDomain
BB [auth J]IPR044330Nonstructural protein 15, N-terminal domain, alpha/beta-coronavirusDomain
BB [auth J]IPR041679DNA2/NAM7 helicase-like, C-terminalDomain
BB [auth J]IPR024375Non-structural protein NSP3, SUD-M domain, betacoronavirusDomain
BB [auth J]IPR014828Non-structural protein NSP7, coronavirusDomain
BB [auth J]IPR043503Papain-like viral protease, palm and finger domains, coronavirusHomologous Superfamily
BB [auth J]IPR014829Non-structural protein NSP8, coronavirusDomain
BB [auth J]IPR036499Non-structural protein NSP9 superfamily, coronavirusHomologous Superfamily
BB [auth J]IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
BB [auth J]IPR044389Non-structural protein 2, SARS-CoV-likeDomain
BB [auth J]IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
BB [auth J]IPR008740Peptidase C30, coronavirusDomain
BB [auth J]IPR036333RNA synthesis protein NSP10 superfamily, coronavirusHomologous Superfamily
BB [auth J]IPR047573Non-structural protein 2, middle domain, coronavirusDomain
BB [auth J]IPR049894Coronavirus NSP3, 3Ecto domainDomain
BB [auth J]IPR043472Macro domain-likeHomologous Superfamily
BB [auth J]IPR043609NendoU domain, nidovirusDomain
BB [auth J]IPR032592Non-structural protein NSP3, nucleic acid-binding domain, betacoronavirusDomain
BB [auth J]IPR043613Non-structural protein 2, C-terminal domain, coronavirusDomain
BB [auth J]IPR038083Non-structural protein NSP3A domain-like superfamilyHomologous Superfamily
BB [auth J]IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
BB [auth J]IPR044351RNA-dependent RNA polymerase, SARS-CoV-likeDomain
BB [auth J]IPR024358Non-structural protein NSP3, N-terminal, betacoronavirusDomain
BB [auth J]IPR048673Nonstructural protein 13, stalk domain, coronavirusDomain
BB [auth J]IPR046435NSP14, guanine-N7-methyltransferase domain, coronavirusDomain
BB [auth J]IPR009469RNA-dependent RNA polymerase, N-terminal, coronavirusDomain
BB [auth J]IPR043611Coronavirus replicase NSP3, C-terminalDomain
BB [auth J]IPR044864Non-structural protein NSP3, SUD-N (Mac2) domain, betacoronavirusDomain
BB [auth J]IPR047566Coronavirus replicase NSP3, Y domainDomain
BB [auth J]IPR048672Nonstructural protein 13, zinc-binding domain, coronavirusDomain
BB [auth J]IPR043612Non-structural protein NSP4, N-terminal, coronavirusDomain
BB [auth J]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
BB [auth J]IPR043608Nonstructural protein 15, middle domain, coronavirusDomain
BB [auth J]IPR044353NSP3, second ubiquitin-like (Ubl) domain, coronavirusDomain
BB [auth J]IPR037204Non-structural protein NSP7 superfamily, coronavirusHomologous Superfamily
BB [auth J]IPR046443NSP1, globular domain, alpha/betacoronavirusDomain
BB [auth J]IPR043610Non-structural protein 6, coronavirusDomain
BB [auth J]IPR027351(+) RNA virus helicase core domainDomain
BB [auth J]IPR044322Nonstructural protein 15, middle domain, alpha/betacoronavirusDomain
BB [auth J]IPR009461Non-structural protein NSP16, coronavirus-likeDomain
BB [auth J]IPR043477Peptidase C30, domain 3, coronavirusHomologous Superfamily
BB [auth J]IPR043478Non-structural protein NSP3, SUD-N (Mac2) domain superfamily, betacoronavirusHomologous Superfamily
BB [auth J]IPR038400Non-structural protein NSP3, SUD-M domain superfamily, betacoronavirusHomologous Superfamily
BB [auth J]IPR046442NSP1, C-terminal domain, betacoronavirusDomain
BB [auth J]IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
BB [auth J]IPR044401NSP15, NendoU domain, coronavirusDomain
BB [auth J]IPR014822Non-structural protein NSP9, coronavirusDomain
BB [auth J]IPR038030NSP1 globular domain superfamily, betacoronavirusHomologous Superfamily
BB [auth J]IPR021590NSP1, globular domain, betacoronavirusDomain
BB [auth J]IPR044367Non-structural protein 6, betacoronavirusDomain
BB [auth J]IPR037230Non-structural protein NSP8 superfamily, coronavirusHomologous Superfamily
BB [auth J]IPR046440Arterivirus Nsp11 N-terminal/Coronavirus NSP15 middle domainDomain
BB [auth J]IPR032505Non-structural protein NSP4, C-terminal, coronavirusDomain
BB [auth J]IPR046438Nidovirus 2-O-methyltransferaseDomain
BB [auth J]IPR002589Macro domainDomain
BB [auth J]IPR047567Non-structural protein NSP3, group 2-specific marker domain, betacoronavirusDomain
BB [auth J]IPR044371Non-structural protein 3, X-domain-likeDomain
BB [auth J]IPR007094RNA-directed RNA polymerase, catalytic domainDomain

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A [auth a]PharosP08865
C [auth d]PharosP15880
D [auth Q]PharosP62854
E [auth q]PharosP62701
F [auth W]PharosP62945
G [auth r]PharosP62753
H [auth s]PharosP62081
I [auth t]PharosP62241
J [auth c]PharosP46781
K [auth n]PharosP62280
L [auth m]PharosP62277
M [auth y]PharosP63220
N [auth D]PharosP62244
O [auth z]PharosP62847
P [auth R]PharosP42677
Q [auth T]PharosP62861
S [auth w]PharosP08708
T [auth b]PharosP23396
U [auth e]PharosP46782
V [auth u]PharosP46783
W [auth v]PharosP25398
X [auth o]PharosP62841
Y [auth g]PharosP62249
Z [auth k]PharosP62269
AA [auth x]PharosP39019
BA [auth h]PharosP60866
CA [auth P]PharosP62851
DA [auth S]PharosP62857
EA [auth l]PharosP62273
FA [auth U]PharosP62979
GA [auth V]PharosP63244
HA [auth i]PharosP62263
IA [auth j]PharosP62266
JA [auth G]PharosP47813
KA [auth I]PharosQ13347
LA [auth B]PharosP55884
MA [auth A]PharosQ14152
NA [auth C]PharosQ99613
OA [auth E]PharosP60228
PA [auth F]PharosO00303
QA [auth H]PharosO15372
RA [auth K]PharosQ9UBQ5
TA [auth M]PharosQ7L2H7
UA [auth N]PharosO15371
XA [auth 4]PharosP20042
YA [auth O]PharosP05198
ZA [auth Y]PharosP41091
AB [auth Z]PharosP41567