8DBU

E. coli ATP synthase imaged in 10mM MgATP State2 "down" Fo classified


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AF_UNCLASSIFIEDe8dbuA1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: F_UNCLASSIFIEDECOD (1.6)
AF_UNCLASSIFIEDe8dbuA3 A: alpha superhelicesX: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology)H: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology)T: C-terminal domain of alpha and beta subunits of F1 ATP synthaseF: F_UNCLASSIFIEDECOD (1.6)
AF_UNCLASSIFIEDe8dbuA2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: F_UNCLASSIFIEDECOD (1.6)
BF_UNCLASSIFIEDe8dbuB3 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: F_UNCLASSIFIEDECOD (1.6)
BF_UNCLASSIFIEDe8dbuB1 A: alpha superhelicesX: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology)H: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology)T: C-terminal domain of alpha and beta subunits of F1 ATP synthaseF: F_UNCLASSIFIEDECOD (1.6)
BF_UNCLASSIFIEDe8dbuB2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: F_UNCLASSIFIEDECOD (1.6)
CF_UNCLASSIFIEDe8dbuC1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: F_UNCLASSIFIEDECOD (1.6)
CF_UNCLASSIFIEDe8dbuC3 A: alpha superhelicesX: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology)H: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology)T: C-terminal domain of alpha and beta subunits of F1 ATP synthaseF: F_UNCLASSIFIEDECOD (1.6)
CF_UNCLASSIFIEDe8dbuC2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: F_UNCLASSIFIEDECOD (1.6)
EF_UNCLASSIFIEDe8dbuE1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: F_UNCLASSIFIEDECOD (1.6)
EF_UNCLASSIFIEDe8dbuE2 A: alpha superhelicesX: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology)H: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology)T: C-terminal domain of alpha and beta subunits of F1 ATP synthaseF: F_UNCLASSIFIEDECOD (1.6)
EF_UNCLASSIFIEDe8dbuE3 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: F_UNCLASSIFIEDECOD (1.6)
DF_UNCLASSIFIEDe8dbuD2 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: F_UNCLASSIFIEDECOD (1.6)
DF_UNCLASSIFIEDe8dbuD1 A: alpha superhelicesX: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology)H: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology)T: C-terminal domain of alpha and beta subunits of F1 ATP synthaseF: F_UNCLASSIFIEDECOD (1.6)
DF_UNCLASSIFIEDe8dbuD3 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: F_UNCLASSIFIEDECOD (1.6)
FF_UNCLASSIFIEDe8dbuF1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: F_UNCLASSIFIEDECOD (1.6)
FF_UNCLASSIFIEDe8dbuF3 A: alpha superhelicesX: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology)H: C-terminal domain of alpha and beta subunits of F1 ATP synthase (From Topology)T: C-terminal domain of alpha and beta subunits of F1 ATP synthaseF: F_UNCLASSIFIEDECOD (1.6)
FF_UNCLASSIFIEDe8dbuF2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: F_UNCLASSIFIEDECOD (1.6)
GF_UNCLASSIFIEDe8dbuG1 A: a/b three-layered sandwichesX: ATP synthase (F1-ATPase), gamma subunit (From Topology)H: ATP synthase (F1-ATPase), gamma subunit (From Topology)T: ATP synthase (F1-ATPase), gamma subunitF: F_UNCLASSIFIEDECOD (1.6)
HF_UNCLASSIFIEDe8dbuH1 A: beta sandwichesX: Epsilon subunit of F1F0-ATP synthase-NH: Epsilon subunit of F1F0-ATP synthase-N (From Topology)T: Epsilon subunit of F1F0-ATP synthase-NF: F_UNCLASSIFIEDECOD (1.6)
HF_UNCLASSIFIEDe8dbuH2 A: alpha bundlesX: Long alpha-hairpinH: Epsilon subunit of F1F0-ATP synthase C-terminal domain (From Topology)T: Epsilon subunit of F1F0-ATP synthase C-terminal domainF: F_UNCLASSIFIEDECOD (1.6)
L [auth M]F_UNCLASSIFIEDe8dbuM1 A: extended segmentsX: F1F0 ATP synthase subunit C (From Topology)H: F1F0 ATP synthase subunit C (From Topology)T: F1F0 ATP synthase subunit CF: F_UNCLASSIFIEDECOD (1.6)
N [auth O]F_UNCLASSIFIEDe8dbuO1 A: extended segmentsX: F1F0 ATP synthase subunit C (From Topology)H: F1F0 ATP synthase subunit C (From Topology)T: F1F0 ATP synthase subunit CF: F_UNCLASSIFIEDECOD (1.6)
P [auth Q]F_UNCLASSIFIEDe8dbuQ1 A: extended segmentsX: F1F0 ATP synthase subunit C (From Topology)H: F1F0 ATP synthase subunit C (From Topology)T: F1F0 ATP synthase subunit CF: F_UNCLASSIFIEDECOD (1.6)
IF_UNCLASSIFIEDe8dbuI1 A: extended segmentsX: F1F0 ATP synthase subunit C (From Topology)H: F1F0 ATP synthase subunit C (From Topology)T: F1F0 ATP synthase subunit CF: F_UNCLASSIFIEDECOD (1.6)
JF_UNCLASSIFIEDe8dbuJ1 A: extended segmentsX: F1F0 ATP synthase subunit C (From Topology)H: F1F0 ATP synthase subunit C (From Topology)T: F1F0 ATP synthase subunit CF: F_UNCLASSIFIEDECOD (1.6)
K [auth L]F_UNCLASSIFIEDe8dbuL1 A: extended segmentsX: F1F0 ATP synthase subunit C (From Topology)H: F1F0 ATP synthase subunit C (From Topology)T: F1F0 ATP synthase subunit CF: F_UNCLASSIFIEDECOD (1.6)
M [auth N]F_UNCLASSIFIEDe8dbuN1 A: extended segmentsX: F1F0 ATP synthase subunit C (From Topology)H: F1F0 ATP synthase subunit C (From Topology)T: F1F0 ATP synthase subunit CF: F_UNCLASSIFIEDECOD (1.6)
O [auth P]F_UNCLASSIFIEDe8dbuP1 A: extended segmentsX: F1F0 ATP synthase subunit C (From Topology)H: F1F0 ATP synthase subunit C (From Topology)T: F1F0 ATP synthase subunit CF: F_UNCLASSIFIEDECOD (1.6)
Q [auth R]F_UNCLASSIFIEDe8dbuR1 A: extended segmentsX: F1F0 ATP synthase subunit C (From Topology)H: F1F0 ATP synthase subunit C (From Topology)T: F1F0 ATP synthase subunit CF: F_UNCLASSIFIEDECOD (1.6)
R [auth S]F_UNCLASSIFIEDe8dbuS1 A: extended segmentsX: F1F0 ATP synthase subunit C (From Topology)H: F1F0 ATP synthase subunit C (From Topology)T: F1F0 ATP synthase subunit CF: F_UNCLASSIFIEDECOD (1.6)
S [auth W]F_UNCLASSIFIEDe8dbuW1 A: alpha bundlesX: ATPD N-terminal domain-likeH: N-terminal domain of the delta subunit of the F1F0-ATP synthase (From Topology)T: N-terminal domain of the delta subunit of the F1F0-ATP synthaseF: F_UNCLASSIFIEDECOD (1.6)
T [auth X]F_UNCLASSIFIEDe8dbuX1 A: extended segmentsX: F-type ATP synthase subunit b (From Topology)H: F-type ATP synthase subunit b (From Topology)T: F-type ATP synthase subunit bF: F_UNCLASSIFIEDECOD (1.6)
U [auth Y]F_UNCLASSIFIEDe8dbuY1 A: extended segmentsX: F-type ATP synthase subunit b (From Topology)H: F-type ATP synthase subunit b (From Topology)T: F-type ATP synthase subunit bF: F_UNCLASSIFIEDECOD (1.6)
V [auth a]F_UNCLASSIFIEDe8dbua1 A: alpha bundlesX: F1F0 ATP synthase subunit A (From Topology)H: F1F0 ATP synthase subunit A (From Topology)T: F1F0 ATP synthase subunit AF: F_UNCLASSIFIEDECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C
PF00006ATP synthase alpha/beta family, nucleotide-binding domain (ATP-synt_ab)ATP synthase alpha/beta family, nucleotide-binding domainThis entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho.Domain
A, B, C
PF00306ATP synthase alpha/beta chain, C terminal domain (ATP-synt_ab_C)ATP synthase alpha/beta chain, C terminal domain- Domain
A, B, C
PF02874ATP synthase alpha/beta family, beta-barrel domain (ATP-synt_ab_N)ATP synthase alpha/beta family, beta-barrel domainThis family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella.Domain
D, E, F
PF00006ATP synthase alpha/beta family, nucleotide-binding domain (ATP-synt_ab)ATP synthase alpha/beta family, nucleotide-binding domainThis entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho.Domain
D, E, F
PF02874ATP synthase alpha/beta family, beta-barrel domain (ATP-synt_ab_N)ATP synthase alpha/beta family, beta-barrel domainThis family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella.Domain
PF00231ATP synthase (ATP-synt)ATP synthase- Domain
PF02823ATP synthase, Delta/Epsilon chain, beta-sandwich domain (ATP-synt_DE_N)ATP synthase, Delta/Epsilon chain, beta-sandwich domainPart of the ATP synthase CF(1). These subunits are part of the head unit of the ATP synthase. The subunit is called epsilon in bacteria and delta in mitochondria. In bacteria the delta (D) subunit is equivalent to the mitochondrial Oligomycin sensit ...Part of the ATP synthase CF(1). These subunits are part of the head unit of the ATP synthase. The subunit is called epsilon in bacteria and delta in mitochondria. In bacteria the delta (D) subunit is equivalent to the mitochondrial Oligomycin sensitive subunit, OSCP (Pfam:PF00213).
Domain
PF00401ATP synthase, Delta/Epsilon chain, long alpha-helix domain (ATP-synt_DE)ATP synthase, Delta/Epsilon chain, long alpha-helix domainPart of the ATP synthase CF(1). These subunits are part of the head unit of the ATP synthase. This subunit is called epsilon in bacteria and delta in mitochondria. In bacteria the delta (D) subunit is equivalent to the mitochondrial Oligomycin sens ...Part of the ATP synthase CF(1). These subunits are part of the head unit of the ATP synthase. This subunit is called epsilon in bacteria and delta in mitochondria. In bacteria the delta (D) subunit is equivalent to the mitochondrial Oligomycin sensitive subunit, OSCP (Pfam:PF00213). This entry includes the epsilon subunit from bacteria and plants.
Domain
PF00137ATP synthase subunit C (ATP-synt_C)ATP synthase subunit C- Family
S [auth W]PF00213ATP synthase delta (OSCP) subunit (OSCP)ATP synthase delta (OSCP) subunit- Family
T [auth X],
U [auth Y]
PF00430ATP synthase B/B' CF(0) (ATP-synt_B)ATP synthase B/B' CF(0)- Coiled-coil
V [auth a]PF00119ATP synthase A chain (ATP-synt_A)ATP synthase A chain- Domain

Gene Product Annotation Gene Product Annotation

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C
ATP synthase subunit alpha---
D, E, F
ATP synthase subunit beta -
ATP synthase gamma chain
ATP synthase epsilon chain -
ATP synthase subunit c -
S [auth W]ATP synthase subunit delta -
T [auth X],
U [auth Y]
ATP synthase subunit b -
V [auth a]ATP synthase subunit a -

InterPro Annotation InterPro: Classification of protein families

ChainsAccessionNameType
D, E, F
IPR004100ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domainDomain
D, E, F
IPR024034ATPase, F1/V1 complex, beta/alpha subunit, C-terminalHomologous Superfamily
D, E, F
IPR036121ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamilyHomologous Superfamily
D, E, F
IPR020003ATPase, alpha/beta subunit, nucleotide-binding domain, active siteActive Site
D, E, F
IPR000194ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domainDomain
D, E, F
IPR003593AAA+ ATPase domainDomain
D, E, F
IPR005722ATP synthase, F1 complex, beta subunitFamily
D, E, F
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR023632ATP synthase, F1 complex, gamma subunit conserved siteConserved Site
IPR000131ATP synthase, F1 complex, gamma subunitFamily
IPR035968ATP synthase, F1 complex, gamma subunit superfamilyHomologous Superfamily
IPR036771F0F1 ATP synthase delta/epsilon subunit, N-terminalHomologous Superfamily
IPR036794ATP synthase delta/epsilon subunit, C-terminal domain superfamilyHomologous Superfamily
IPR020546ATP synthase, F1 complex, delta/epsilon subunit, N-terminalDomain
IPR020547ATP synthase epsilon subunit, C-terminal domainDomain
IPR001469ATP synthase, F1 complex, delta/epsilon subunitFamily
IPR035921F/V-ATP synthase subunit C superfamilyHomologous Superfamily
IPR005953ATP synthase, F0 complex, subunit C, bacterial/chloroplastFamily
IPR038662F1F0 ATP synthase subunit C superfamilyHomologous Superfamily
IPR020537ATP synthase, F0 complex, subunit C, DCCD-binding siteBinding Site
IPR000454ATP synthase, F0 complex, subunit CFamily
IPR002379V-ATPase proteolipid subunit C-like domainDomain
S [auth W]IPR020781ATPase, OSCP/delta subunit, conserved siteConserved Site
S [auth W]IPR000711ATPase, OSCP/delta subunitFamily
S [auth W]IPR026015F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamilyHomologous Superfamily
T [auth X],
U [auth Y]
IPR002146ATP synthase, F0 complex, subunit b/b', bacterial/chloroplastFamily
T [auth X],
U [auth Y]
IPR005864ATP synthase, F0 complex, subunit b, bacterialFamily
T [auth X],
U [auth Y]
IPR028987F-type ATP synthase subunit B-like, membrane domain superfamilyHomologous Superfamily
V [auth a]IPR023011ATP synthase, F0 complex, subunit A, active siteActive Site
V [auth a]IPR000568ATP synthase, F0 complex, subunit AFamily
V [auth a]IPR035908ATP synthase, F0 complex, subunit A superfamilyHomologous Superfamily
V [auth a]IPR045082ATP synthase, F0 complex, subunit A, bacterial/chloroplastFamily