8YJF | pdb_00008yjf

Structure of human SPT16 MD-CTD and MCM2 HBD chaperoning a histone H3-H4 tetramer and an H2A-H2B dimer


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyPH domain-like 8103651 3000134 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyPH domain-like 8103657 3000134 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyMCM2 histone-binding domains (HBDs) 8107353 3002871 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyCore histone-like 8039340 3001387 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyCore histone-like 8039340 3001387 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyCore histone-like 8070545 3001387 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyCore histone-like 8070545 3001387 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyCore histone-like 8066283 3001387 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyCore histone-like 8067132 3001387 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF08512Histone chaperone Rttp106-like, middle domain (Rttp106-like_middle)Histone chaperone Rttp106-like, middle domainThis Pleckstrin homology (PH) domain is found in the middle region of Rttp106, a histone chaperone involved in heterochromatin-mediated silencing [1]. It is also found in the final part of the middle domain of various FACT (facilitates chromatin tran ...Domain
D, F
PF15511Centromere kinetochore component CENP-T histone fold (CENP-T_C)Centromere kinetochore component CENP-T histone foldCENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly asso ...Domain
PF16211C-terminus of histone H2A (Histone_H2A_C)C-terminus of histone H2A- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
FACT complex subunit SPT16
DNA replication licensing factor MCM2
C, E
Histone H3.1
D, F
Histone H4
Histone H2B type 2-E
Histone H2A type 1-D

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR033825FACT complex subunit Spt16, peptidase M24-like domainDomain
IPR048969FACT complex subunit SPT16, C-terminal domainDomain
IPR029149Creatinase/Aminopeptidase P/Spt16, N-terminalHomologous Superfamily
IPR011993PH-like domain superfamilyHomologous Superfamily
IPR013719Histone chaperone RTT106/FACT complex subunit SPT16-like, middle domainDomain
IPR040258FACT complex subunit Spt16Family
IPR013953FACT complex subunit SPT16, middle domainDomain
IPR029148FACT complex subunit SPT16, N-terminal lobe domainDomain
IPR036005Creatinase/aminopeptidase-likeHomologous Superfamily
IPR000994Peptidase M24Domain
IPR031327Mini-chromosome maintenance proteinFamily
IPR018525Mini-chromosome maintenance, conserved siteConserved Site
IPR001208MCM domainDomain
IPR041562MCM, AAA-lid domainDomain
IPR008045DNA replication licensing factor Mcm2Family
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR027925MCM, N-terminal domainDomain
IPR033762MCM OB domainDomain
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
C, E
IPR009072Histone-foldHomologous Superfamily
C, E
IPR007125Histone H2A/H2B/H3Domain
C, E
IPR000164Histone H3/CENP-AFamily
D, F
IPR009072Histone-foldHomologous Superfamily
D, F
IPR035425CENP-T/Histone H4, histone foldDomain
D, F
IPR001951Histone H4Family
D, F
IPR019809Histone H4, conserved siteConserved Site
D, F
IPR004823TATA box binding protein associated factor (TAF), histone-like fold domainDomain
IPR009072Histone-foldHomologous Superfamily
IPR007125Histone H2A/H2B/H3Domain
IPR000558Histone H2BFamily
IPR055333Histone H2B, conserved siteConserved Site
IPR009072Histone-foldHomologous Superfamily
IPR007125Histone H2A/H2B/H3Domain
IPR002119Histone H2AFamily
IPR032454Histone H2A, C-terminal domainDomain
IPR032458Histone H2A conserved siteConserved Site

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
PharosQ9Y5B9
PharosP49736
C, E
PharosP68431
D, F
PharosP62805
PharosQ16778
PharosP20671