1A7N

FV FRAGMENT OF MOUSE MONOCLONAL ANTIBODY D1.3 (BALB/C, IGG1, K) VARIANT FOR CHAIN L GLU81->ASP AND CHAIN H LEU312->VAL


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1VFAPDB ENTRY 1VFA

Crystallization

Crystal Properties
Matthews coefficientSolvent content
2.3539.7

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 90.179α = 90
b = 90.179β = 90
c = 56.627γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray269IMAGE PLATEMARRESEARCH1992-06-16M
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.9617.1897.10.0898.121806422.13
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.962.1181.60.2617.1

Refinement

Statistics
Diffraction IDStructure Solution MethodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTPDB ENTRY 1VFA2.01615187151870.15521.49
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
p_staggered_tor16.8
p_transverse_tor11.4
p_scangle_it4.211
p_scbond_it2.868
p_planar_tor2.36
p_mcangle_it1.947
p_mcbond_it1.259
p_singtor_nbd0.177
p_multtor_nbd0.176
p_xyhbond_nbd0.16
RMS Deviations
KeyRefinement Restraint Deviation
p_staggered_tor16.8
p_transverse_tor11.4
p_scangle_it4.211
p_scbond_it2.868
p_planar_tor2.36
p_mcangle_it1.947
p_mcbond_it1.259
p_singtor_nbd0.177
p_multtor_nbd0.176
p_xyhbond_nbd0.16
p_chiral_restr0.116
p_angle_d0.046
p_planar_d0.045
p_bond_d0.013
p_plane_restr0.013
p_angle_deg
p_hb_or_metal_coord
p_xhyhbond_nbd
p_orthonormal_tor
p_special_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1717
Nucleic Acid Atoms
Solvent Atoms192
Heterogen Atoms

Software

Software
Software NamePurpose
MOSFLMdata reduction
AGROVATA/ROTAVATAdata reduction
ALMN/CCP4model building
CCP4refinement
Agrovatadata scaling
ROTAVATAdata scaling
CCP4phasing