1ALZ
GRAMICIDIN D FROM BACILLUS BREVIS (ETHANOL SOLVATE)
X-RAY DIFFRACTION
Crystallization
Crystalization Experiments | ||||
---|---|---|---|---|
ID | Method | pH | Temperature | Details |
1 | 7 | CRYSTALLIZED BY BATCH METHODS FROM A SATURATED SOLUTION OF GRAMICIDIN D IN ETHANOL., PH 7.0, BATCH METHOD |
Crystal Properties | |
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Matthews coefficient | Solvent content |
1.76 | 30 |
Crystal Data
Unit Cell | |
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Length ( Å ) | Angle ( ˚ ) |
a = 31.595 | α = 90 |
b = 32.369 | β = 90 |
c = 24.219 | γ = 90 |
Symmetry | |
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Space Group | P 21 21 21 |
Diffraction
Diffraction Experiment | ||||||||||||||
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ID # | Crystal ID | Scattering Type | Data Collection Temperature | Detector | Detector Type | Details | Collection Date | Monochromator | Protocol | |||||
1 | 1 | x-ray | 120 | AREA DETECTOR | SIEMENS | COLLIMATOR | 1987-01-01 | M |
Radiation Source | |||||
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ID # | Source | Type | Wavelength List | Synchrotron Site | Beamline |
1 | SEALED TUBE | OTHER |
Data Collection
Overall | |||||||||||||||||||
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ID # | Resolution (High) | Resolution (Low) | Percent Possible (Observed) | R Merge I (Observed) | R Sym I (Observed) | Net I Over Average Sigma (I) | Redundancy | Number Reflections (All) | Number Reflections (Observed) | Observed Criterion Sigma (F) | Observed Criterion Sigma (I) | B (Isotropic) From Wilson Plot | |||||||
1 | 0.86 | 100 | 99.9 | 0.043 | 0.043 | 5.1 | 1.1 | 21454 | -3 |
Highest Resolution Shell | |||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ID # | Resolution (High) | Resolution (Low) | Percent Possible (All) | Percent Possible (Observed) | R Merge I (Observed) | R-Sym I (Observed) | Mean I Over Sigma (Observed) | Redundancy | Number Unique Reflections (All) | ||||||||||
1 | 0.86 | 0.9 | 93.6 | 0.043 | 0.043 | 1.2 | 1.1 |
Refinement
Statistics | |||||||||||||||||||
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Diffraction ID | Structure Solution Method | Cross Validation method | Resolution (High) | Resolution (Low) | Number Reflections (All) | Number Reflections (R-Free) | Percent Reflections (Observed) | R-Factor (All) | R-Factor (Observed) | R-Work | R-Free | R-Free Selection Details | Mean Isotropic B | ||||||
X-RAY DIFFRACTION | DIRECT METHODS, FOURIER RECYCLING | FREE R-VALUE | 0.86 | 100 | 21454 | 1033 | 99.2 | 0.162 | 0.162 | 0.185 | 5% OF REFLECTIONS IN THIN RESOLUTION SHELLS. |
Temperature Factor Modeling | ||||||
---|---|---|---|---|---|---|
Anisotropic B[1][1] | Anisotropic B[1][2] | Anisotropic B[1][3] | Anisotropic B[2][2] | Anisotropic B[2][3] | Anisotropic B[3][3] | |
Coordinate Error | ||
---|---|---|
Structure Solution Method | Refinement High Resolution | Refinement Low Resolution |
5 | 365.06 | 312.16 |
RMS Deviations | |
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Key | Refinement Restraint Deviation |
s_from_restr_planes | 0.339 |
s_zero_chiral_vol | 0.114 |
s_non_zero_chiral_vol | 0.113 |
s_approx_iso_adps | 0.036 |
s_angle_d | 0.032 |
s_similar_adp_cmpnt | 0.03 |
s_bond_d | 0.016 |
s_rigid_bond_adp_cmpnt | 0.005 |
s_similar_dist | |
s_anti_bump_dis_restr |
Non-Hydrogen Atoms Used in Refinement | |
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Non-Hydrogen Atoms | Number |
Protein Atoms | 294 |
Nucleic Acid Atoms | |
Solvent Atoms | 1 |
Heterogen Atoms | 42 |
Software
Software | |
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Software Name | Purpose |
SHELXL-97 | model building |
SHELXL-97 | refinement |
SIEMENS | data reduction |
SIEMENS | data scaling |
SHELXL-97 | phasing |