X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1LLPPDB ENTRY 1LLP

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
13.517 % PEG 6000 PH 3.5
Crystal Properties
Matthews coefficientSolvent content
2.653

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 73.48α = 90
b = 94.93β = 90
c = 230.13γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray293IMAGE PLATEMARRESEARCH1998-04-09MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE BM1AESRFBM1A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.732094.40.07812.24.97936917.5
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.731.7991.10.274.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1LLP1.73207934494.40.170.208RANDOM22.1
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor32.9
p_staggered_tor12.4
p_planar_tor3.5
p_scangle_it2.96
p_mcangle_it2.1
p_scbond_it1.883
p_mcbond_it1.392
p_multtor_nbd0.26
p_singtor_nbd0.17
p_xyhbond_nbd0.122
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor32.9
p_staggered_tor12.4
p_planar_tor3.5
p_scangle_it2.96
p_mcangle_it2.1
p_scbond_it1.883
p_mcbond_it1.392
p_multtor_nbd0.26
p_singtor_nbd0.17
p_xyhbond_nbd0.122
p_chiral_restr0.119
p_planar_d0.032
p_angle_d0.027
p_plane_restr0.021
p_bond_d0.012
p_angle_deg
p_hb_or_metal_coord
p_xhyhbond_nbd
p_orthonormal_tor
p_special_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5227
Nucleic Acid Atoms
Solvent Atoms573
Heterogen Atoms92

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
AMoREphasing
REFMACrefinement