1DEK

DEOXYNUCLEOSIDE MONOPHOSPHATE KINASE COMPLEXED WITH DEOXY-GMP


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
16.5pH 6.5
Crystal Properties
Matthews coefficientSolvent content
2.9859

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 155.2α = 90
b = 58.5β = 108.1
c = 75.7γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray277IMAGE PLATEMAR scanner 300 mm plateELLIPTICAL MIRROR1994-09-30M
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONEMBL/DESY, HAMBURG BEAMLINE BW7BEMBL/DESY, HAMBURGBW7B

Data Collection

Refinement

Statistics
Diffraction IDStructure Solution MethodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTION21041793990.18734
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor24.2
p_staggered_tor18.3
p_scangle_it10.7
p_scbond_it7.6
p_mcangle_it6.2
p_mcbond_it4.1
p_planar_tor2.5
p_multtor_nbd0.198
p_chiral_restr0.148
p_singtor_nbd0.129
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor24.2
p_staggered_tor18.3
p_scangle_it10.7
p_scbond_it7.6
p_mcangle_it6.2
p_mcbond_it4.1
p_planar_tor2.5
p_multtor_nbd0.198
p_chiral_restr0.148
p_singtor_nbd0.129
p_planar_d0.033
p_angle_d0.028
p_bond_d0.014
p_plane_restr0.014
p_angle_deg
p_hb_or_metal_coord
p_xhyhbond_nbd
p_xyhbond_nbd
p_orthonormal_tor
p_special_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3772
Nucleic Acid Atoms
Solvent Atoms287
Heterogen Atoms48

Software

Software
Software NamePurpose
PROLSQrefinement
DENZOdata reduction